XLOC_026338 (chadla)


Basic Information

Item Value
gene id XLOC_026338
gene name chadla
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25108968 ~ 25119839 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051357
GGCAGATGCAGGGGCTTCATCCTGATATCTTGTTTAGCTGGCAAACCTAGCTCCAGCCGTTCTGGGATTAAAGCCTATGACTTGCAAGGATTTTTCAAGATtgccaaaataaaaaagcaagagTGGAAATAGAGGTCTGCAGGTGGAGGAAGGCGCCACCATGAGGCCGACAGTGGGATGTCTGTTGCTCTCTCTAATGATGTCTGTGGGTCAGACTCTGAAGTGTCCGCGTGTCTGCGTCTGTGACAACACAAAGCTCACTGTGAAGTGCATAGGGAATAATCTCACACACATTCCACCTACTATAGACGAGATCATAGTGAAACTGGACTTGAAGAAGAATAATTTTGGGGAACTGCCCAAAAATGCCTTCAAACACACCCCGTACCTGACCCAGCTCAGCCTGCAGGGGTGCAGTGTCCAGGCCGTCAGAGAGGGGGCGTTCCGGGGCCTTTCACGCTTGTTGCAGCTTGACCTCACCAACAACAACATTGACATCCTCTACCAGGAGTCATTTGATGGTTTATCATCACTGAAGCAGTTGTATTTAGACCGGAACCGCATTGAAGAGATCCATCCTGGAGCTTTTGCTGCATTGAACTCTTTAAACCTGCTTTCACTCACTTATAACCAGCTAGTCTACCTTCCTAATATGGCATTTCAGGGTATGATGAATATCCAAATGTTACACTTGAGTCATAACTCCCTTAATAATCTGGCGACTGAAGCCTTTGCTGGTCTTCTTGCTCTTACACACTTAAACCTGGACCATAATGAACTCCAGTACTTCCCCACCAAAACTATGACCAGACTGATTGAGGTGACTCATCTGGACATGAGTTATAACCCCATGACGTATCTGGTTGAGGAGAGCGTGGTTATGCCGAAGCTCACACATCTGTCTCTGAAGCACAATGCTCTGCAGGATCTGTCAGAATCTACCATATCTCTGTCTCCTGTCATCTCTCACCTGGACCTGAGCTTCAACCAGCTGTCGTATATACAGGCCCTCGCAGCATCTACACACCTCACCAGCCTGAACCTCACCGGAAACCCCATCAGGTGTACATGTTTACTGCGGGATCTGAAACTGTGGGCACTGAAGTCAGGAATCAGACTCTTTGGGGTCTGTGCTTGGCCTCCACACCTCTCAGATGAACCTCTGGAAAATGTTCAAGAACAGGATCTCCGCTGCAGACCGCAGGATGAGTGGACATCAGATGTGATTGAAGAAGGcacaaaagaagaagaagaaggagtgCAAGAAAAGACAGTATCTACAGCCAAGTCAAAGAAAACAAGGAAATGCCCAAAGGATTGCCTATGTGAGTATGCAGCTCAGCACGCTACATGTGAAAACCGTGGCCACACTAAAGTCCCCTCTGGTTTCCCGAGAAAAACACTTCTTCTTGACATGCGTGGCAATCATTTCCACTATCTCCCAAGCAAAAGTTTCCCTGGCATCCCCGAGGTGGTGTCTCTTCACCTGGACAGCTGTAAGATCCATGAGATCGAAGGTGGAGCTTTCCAGGGCATGAAGAACCTGATATACCTCTACCTGTCCGACAACCAGCTGTCCTCTCTGGACGCAAAAGTCTTTGAAGGTGCCCATGAGATCATGTACCTTCACCTGGAAGACAATaaactcactcattttccttcatcaGCAACTCTGACTCACATTCCCAAACTCCTGGAGCTGCATCTGGAGAGAAACCTCATAGCTAAACTAGAGCCTTCAGGACTTCTTTCTCCAGTCCTTCAGCTTACAGGACTCTACCTCAATAACAACTCCATCGCTACTATAGTGCCGAAAGCTCTGGATCCTGCTCCCAAGTTGGACGTTCTTCATCTTGAAGATAATGTGTTAACGGATGTGCCAAGTGATGCATTAGACCACGCCCCTCTTTTGACTGAGCTCCACCTCTCTGGGAATCTGATTCGCTGGATCGGTCCCAGAGCATTTCGCGTGGTGGCTGAAAGTCTAAAGAACCTGCTCATTGATAGAATGGGTCTTCAAAAGATGAGTGTGAGGTCTCTGGCAGGGTTTGGTCCTCGTCTGCTGTCTTTGTCTCTGGAAGACAATCTGTTGGAGGAGTTGCCTGACCTTTCACCTCTTGCTGGACTTCAAAACCTCAGTCTCAACAAAAATCCACTAATGTGTGACTGCAAATTGCTACCATTTTACAGATGGTTGGAGAAGATGAGTCTGAGGGTTGAGGCGGTGTGCTTTTACCCCTCCGAGCTTCGAGGTCAGTCTGTAATGGAGTCTGCCATCTATAAGAACTGCTCTATAGAAAATGCTCATTCCTTTAATGAGACCTCCATCCCAACCAAAGCCCATGAACCCAACATACCCAACCCCACACAGCCCACAGAACCATCTTATGCTAAACTGAAACTGGCAAAGACAAAGATAGCTGCGACACCAAAGAAAACCAAATCTAAAGAATTCAAACCAGAGCGAGCTCTGAAAATGACCAGgccaaacaagaaaaaaagaagacgaCCAAAAATGAAGTTGCCAATGATATGAGCAATAGGATTTCTTGATTTAAACGATATAGATATCATACTAAGGGGTAGTAGTGCTGCTGATTTGTTTACGGGTAATCCAGTGCACGAGTCCATATGcccccattttttaaaaatgaaagcgaaagcgaggctgcggtgggaagaaacccagaggAATAGGATCAGCACGTTAAACATGTACTCCACAACATGCTGTGGAGTACAAACCTCTTGCTGTTTCCACGATTTCAAAGTGTAGATGTGGAGTAAAcattcagttaagtttaatttaacaaaaaaaagcacattaGGCCTCAAACAAAACCACAATCTCTTTTAAAGTTATACGCTTAAGTGTCTTACTAGGCTTCAGTTTATGGAACCAGGTAAACACTGCGGGGACGCTTACCTGCTTCAGCCaatgtaacccggtgagcgataaaacaatgcagtcctctcTAGCACACCATTGTGTTGTCAGTAATattgttgtcccggtactgaaatttaaaaaactaaCATTTAACATGCTAGCATTTAAGCGCCGTTGAGCACGTTTTTAAACTCCGCTGATCTGCGGTGAAATTACTGTTATCGGCGGTGATTGTCATCAGTTTACCTCTCTTcacaagtgcaaacacagatacacggacactggagcgttttaaagttcAGTCAAGTCATCAGCAGATCGCTTGTCTGCGTTTGCATTCTGTAAACATTGGTGaagtgcagtgaactgatgacctttacgaccaatcacagtcatttctgttaagcactgGTGGAAAGAAAACAtttgctaactagtgccatttcccttaacttagggGAAAATAAGGTCCGATatgcctttttattttcaccatgcATTCAGAaaggaccttcgggtcactcggaaagtggtgaaattataaatttgtgttca
>TCONS_00051358
TATATTTGTTGTTTCCCCTAGGCTTAGTATATTCAAAGTTTCAGTTTACCTTAAATTGCAGGTCTGCAGGTGGAGGAAGGCGCCACCATGAGGCCGACAGTGGGATGTCTGTTGCTCTCTCTAATGATGTCTGTGGGTCAGACTCTGAAGTGTCCGCGTGTCTGCGTCTGTGACAACACAAAGCTCACTGTGAAGTGCATAGGGAATAATCTCACACACATTCCACCTACTATAGACGAGATCATAGTGAAACTGGACTTGAAGAAGAATAATTTTGGGGAACTGCCCAAAAATGCCTTCAAACACACCCCGTACCTGACCCAGCTCAGCCTGCAGGGGTGCAGTGTCCAGGCCGTCAGAGAGGGGGCGTTCCGGGGCCTTTCACGCTTGTTGCAGCTTGACCTCACCAACAACAACATTGACATCCTCTACCAGGTTTGTGTCAGAAGTTATCGTTTAAGCCTGTAGGTGTGTTTATTAAAGATGAATGGAATGTGTGAtttgatcaatgtttttttttctttcactgctCCTTTAGGAGTCATTTGATGGTTTATCATCACTGAAGCAGTTGTATTTAGACCGGAACCGCATTGAAGAGATCCATCCTGGAGCTTTTGCTGCATTGAACTCTTTAAACCTGCTTTCACTCACTTATAACCAGCTAGTCTACCTTCCTAATATGGCATTTCAGGGTATGATGAATATCCAAATGTTACACTTGAGTCATAACTCCCTTAATAATCTGGCGACTGAAGCCTTTGCTGGTCTTCTTGCTCTTACACACTTAAACCTGGACCATAATGAACTCCAGTACTTCCCCACCAAAACTATGACCAGGTAAATGgaaatttttactattattattaatatcgttATTATTTTAGTAATCTCTTCTCTTGTTTTGTCTCAGACTGATTGAGGTGACTCATCTGGACATGAGTTATAACCCCATGACGTATCTGGTTGAGGAGAGCGTGGTTATGCCGAAGCTCACACATCTGTCTCTGAAGCACAATGCTCTGCAGGATCTGTCAGAATCTACCATATCTCTGTCTCCTGTCATCTCTCACCTGGACCTGAGCTTCAACCAGCTGTCGTATATACAGGCCCTCGCAGCATCTACACACCTCACCAGCCTGAACCTCACCGGAAACCCCATCAGGTGTACATGTTTACTGCGGGATCTGAAACTGTGGGCACTGAAGTCAGGAATCAGACTCTTTGGGGTCTGTGCTTGGCCTCCACACCTCTCAGATGAACCTCTGGAAAATGTTCAAGAACAGGATCTCCGCTGCAGACCGCAGGATGAGTGGACATCAGATGTGATTGAAGAAGGcacaaaagaagaagaagaaggagtgCAAGAAAAGACAGTATCTACAGCCAAGTCAAAGAAAACAAGGAAATGCCCAAAGGATTGCCTATGTGAGTATGCAGCTCAGCACGCTACATGTGAAAACCGTGGCCACACTAAAGTCCCCTCTGGTTTCCCGAGAAAAACACTTCTTCTTGACATGCGTGGCAATCATTTCCACTATCTCCCAAGCAAAAGTTTCCCTGGCATCCCCGAGGTGGTGTCTCTTCACCTGGACAGCTGTAAGATCCATGAGATCGAAGGTGGAGCTTTCCAGGGCATGAAGAACCTGATATACCTCTACCTGTCCGACAACCAGCTGTCCTCTCTGGACGCAAAAGTCTTTGAAGGTGCCCATGAGATCATGTACCTTCACCTGGAAGACAATaaactcactcattttccttcatcaGCAACTCTGACTCACATTCCCAAACTCCTGGAGCTGCATCTGGAGAGAAACCTCATAGCTAAACTAGAGCCTTCAGGACTTCTTTCTCCAGTCCTTCAGCTTACAGGACTCTACCTCAATAACAACTCCATCGCTACTATAGTGCCGAAAGCTCTGGATCCTGCTCCCAAGTTGGACGTTCTTCATCTTGAAGATAATGTGTTAACGGATGTGCCAAGTGATGCATTAGACCACGCCCCTCTTTTGACTGAGCTCCACCTCTCTGGGAATCTGATTCGCTGGATCGGTCCCAGAGCATTTCGCGTGGTGGCTGAAAGTCTAAAGAACCTGCTCATTGATAGAATGGGTCTTCAAAAGATGAGTGTGAGGTCTCTGGCAGGGTTTGGTCCTCGTCTGCTGTCTTTGTCTCTGGAAGACAATCTGTTGGAGGAGTTGCCTGACCTTTCACCTCTTGCTGGACTTCAAAACCTCAGTCTCAACAAAAATCCACTAATGTGTGACTGCAAATTGCTACCATTTTACAGATGGTTGGAGAAGATGAGTCTGAGGGTTGAGGCGGTGTGCTTTTACCCCTCCGAGCTTCGAGGTCAGTCTGTAATGGAGTCTGCCATCTATAAGAACTGCTCTATAGAAAATGCTCATTCCTTTAATGAGACCTCCATCCCAACCAAAGCCCATGAACCCAACATACCCAACCCCACACAGCCCACAGAACCATCTTATGCTAAACTGAAACTGGCAAAGACAAAGATAGCTGCGACACCAAAGAAAACCAAATCTAAAGAATTCAAACCAGAGCGAGCTCTGAAAATGACCAGgccaaacaagaaaaaaagaagacgaCCAAAAATGAAGTTGCCAATGATATGA
>TCONS_00051359
ATCATAGTGAAACTGGACTTGAAGAAGAATAATTTTGGGGAACTGCCCAAAAATGCCTTCAAACACACCCCGTACCTGACCCAGCTCAGCCTGCAGGGGTGCAGTGTCCAGGCCGTCAGAGAGGGGGCGTTCCGGGGCCTTTCACGCTTGTTGCAGCTTGACCTCACCAACAACAACATTGACATCCTCTACCAGGAGTCATTTGATGGTTTATCATCACTGAAGCAGTTGTATTTAGACCGGAACCGCATTGAAGAGATCCATCCTGGAGCTTTTGCTGCATTGAACTCTTTAAACCTGCTTTCACTCACTTATAACCAGCTAGTCTACCTTCCTAATATGGCATTTCAGGGTATGATGAATATCCAAATGTTACACTTGAGTCATAACTCCCTTAATAATCTGGCGACTGAAGCCTTTGCTGGTCTTCTTGCTCTTACACACTTAAACCTGGACCATAATGAACTCCAGTACTTCCCCACCAAAACTATGACCAGGTAAATGgaaatttttactattattattaatatcgttATTATTTTAGTAATCTCTTCTCTTGTTTTGTCTCAGACTGATTGAGGTGACTCATCTGGACATGAGTTATAACCCCATGACGTATCTGGTTGAGGAGAGCGTGGTTATGCCGAAGCTCACACATCTGTCTCTGAAGCACAATGCTCTGCAGGATCTGTCAGAATCTACCATATCTCTGTCTCCTGTCATCTCTCACCTGGACCTGAGCTTCAACCAGCTGTCGTATATACAGGCCCTCGCAGCATCTACACACCTCACCAGCCTGAACCTCACCGGAAACCCCATCAGGTGTACATGTTTACTGCGGGATCTGAAACTGTGGGCACTGAAGTCAGGAATCAGACTCTTTGGGGTCTGTGCTTGGCCTCCACACCTCTCAGATGAACCTCTGGAAAATGTTCAAGAACAGGATCTCCGCTGCAGACCGCAGGATGAGTGGACATCAGATGTGATTGAAGAAGGcacaaaagaagaagaagaaggagtgCAAGAAAAGACAGTATCTACAGCCAAGTCAAAGAAAACAAGGAAATGCCCAAAGGATTGCCTATGTGAGTATGCAGCTCAGCACGCTACATGTGAAAACCGTGGCCACACTAAAGTCCCCTCTGGTTTCCCGAGAAAAACACTTCTTCTTGACATGCGTGGCAATCATTTCCACTATCTCCCAAGCAAAAGTTTCCCTGGCATCCCCGAGGTGGTGTCTCTTCACCTGGACAGCTGTAAGATCCATGAGATCGAAGGTGGAGCTTTCCAGGGCATGAAGAACCTGATATACCTCTACCTGTCCGACAACCAGCTGTCCTCTCTGGACGCAAAAGTCTTTGAAGGTGCCCATGAGATCATGTACCTTCACCTGGAAGACAATaaactcactcattttccttcatcaGCAACTCTGACTCACATTCCCAAACTCCTGGAGCTGCATCTGGAGAGAAACCTCATAGCTAAACTAGAGCCTTCAGGACTTCTTTCTCCAGTCCTTCAGCTTACAGGACTCTACCTCAATAACAACTCCATCGCTACTATAGTGCCGAAAGCTCTGGATCCTGCTCCCAAGTTGGACGTTCTTCATCTTGAAGATAATGTGTTAACGGATGTGCCAAGTGATGCATTAGACCACGCCCCTCTTTTGACTGAGCTCCACCTCTCTGGGAATCTGATTCGCTGGATCGGTCCCAGAGCATTTCGCGTGGTGGCTGAAAGTCTAAAGAACCTGCTCATTGATAGAATGGGTCTTCAAAAGGTAGAGGAGATGCCCTGTTTTGAAGTAATAACAGCAAATCTTTGCCTTTCTTGTGTTTATACTAGACTAAGCTATTTGTCTTTCTTTGGTTGGTGGTAA

Function

symbol description
chadla Predicted to enable transmembrane signaling receptor activity. Predicted to act upstream of or within immune response and toll-like receptor signaling pathway. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human CHADL (chondroadherin like).

GO:

id name namespace
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121205-4 Predicted to enable transmembrane signaling receptor activity. Predicted to act upstream of or within immune response and toll-like receptor signaling pathway. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human CHADL (chondroadherin like).

Ensembl:

ensembl_id ENSDARG00000055160

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051357 False 3445 mRNA 0.45 11 25108968 25119839
TCONS_00051358 False 2639 mRNA 0.46 7 25109877 25118777
TCONS_00051359 True 1882 mRNA 0.46 5 25111355 25116208

Neighbor

gene id symbol gene type direction distance location
XLOC_026337 rbx1 coding downstream 1166 25101960 ~ 25107802 (-)
XLOC_026336 xpnpep3 coding downstream 21982 25059502 ~ 25086986 (-)
XLOC_026335 ep300b coding downstream 53173 24996930 ~ 25055795 (-)
XLOC_026334 desi1a coding downstream 128901 24973025 ~ 24980067 (-)
XLOC_026333 CABZ01050944.1 coding downstream 199723 24793921 ~ 24909245 (-)
XLOC_026339 BX470254.1 coding upstream 12181 25132020 ~ 25135109 (-)
XLOC_026340 mief1 coding upstream 16314 25136153 ~ 25148047 (-)
XLOC_026341 mgat3a coding upstream 117560 25237399 ~ 25268751 (-)
XLOC_026342 ddx5 coding upstream 150022 25269861 ~ 25275403 (-)
XLOC_026343 smurf2 coding upstream 162108 25281947 ~ 25369557 (-)
XLOC_026332 BX569789.2 non-coding downstream 363087 24745766 ~ 24745881 (-)
XLOC_026329 CR790377.1 non-coding downstream 705699 24403149 ~ 24403269 (-)
XLOC_026325 CR751227.3 non-coding downstream 1290922 23817922 ~ 23818046 (-)
XLOC_026324 NA non-coding downstream 1364689 23740351 ~ 23744279 (-)
XLOC_026323 BX927395.1 non-coding downstream 1420681 23686198 ~ 23688287 (-)
XLOC_026348 NA non-coding upstream 563045 25682884 ~ 25701218 (-)
XLOC_026350 NA non-coding upstream 820369 25940208 ~ 25950390 (-)
XLOC_026351 NA non-coding upstream 831386 25951225 ~ 25974082 (-)
XLOC_026352 NA non-coding upstream 864795 25984634 ~ 25988334 (-)

Expression


Co-expression Network