XLOC_026341 (mgat3a)


Basic Information

Item Value
gene id XLOC_026341
gene name mgat3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25237399 ~ 25268751 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051362
GTGCGAATGAAGTCGGGCAGCTGCCAGGAGTGAACAGGAACGCTACATGCTTTGAAGACAAACGAACTGACGGACACATGCAGGAGGAGCAGCATGGGAAGGTCATACCTGTCTGTCAGGATGAGAGTAAAGAGGCATAAGGTCTTCCTGGTGTGCTTACTGGGGATTTGTGTGGTTTCCTTCCTTCATTACTACACAGCCCTGCACAATATTTCTCTGCTGCAGGAGATCTCCTCTCCATCCAGCCATTTGAAGACTCTGAAGATGTTGAGAGGTTTCCTCTGGAACTTTCCAACTGATGACATCCCCTTCAAGCAAGACCGTCAGAAATCCAGCCATCAGAAGGATTTTGTCGACCTGCCAGATCTTCCAGATGCCAAACAGGTCGTCACAAACCTTCACAAGCAGATCTTTGAGCTTCGTGATGATTCTACACCATTTTTTACCCACACCGAGTCTGGAGCATTGTGCTTCCATGAGGGGACGGATCTGGCTGCACTTGCATCTCAAGGCAGGTTACTGAAACATTATGAGGAGAGAACCCCCCTCAAAGATGATTTAATCAAATCAGGCAAGAAGGACGTTCGGTGTCCCTGTCGTCAGGGTTGGCATGGCCCTCAATGTGGCATACCTACTGTTGTGTATCATTCCAATCTCCCATCAAAGTCGAAAGTCACACCCAGAAAAATTCCACGTCGGGTCATCAATGCCATTAACATCAACCACGAGTTTGACCTCCTGCACACGCGCTTCCATGAACTCGCAGATGTCGTGGACACATTTTTGGTTTGCGAATCCAATTTTACAGCTTATGGAGACGCAAGACCTTTGTACTTAAAGCATCTGATCCTAAATGgaacatttgattacattaagcACAAGATTCTTTATATCTTCTTGGACCATTTTCCTGATGGTGGCCGCATGGATGGCTGGATTGCGGATGATTACCTGCGCACATATTTGACCAAAAATGGAATGGCAAGGATTCAGGGCCTCAAACCAGATGATGTGTTCATCTTGAACGATGCAGATGAAATTCCTTCACGAGATGGAATTCTGTTCCTTAAACTCTACGATGGATGGACTGAACCGGTCGGGATCCATTTGCGTAAATCCTTATATGGGTTTTTCTGGAGACAGTATGGAACGCTTAACGTCTTATCCGCTTGCACGGCAGCTATGCTTTTTAAGGTTTACAAGGGTGATGGGATTTATCTTCGACGCCGGTCATATTATACCATGTCGGGATTTCGGGAGTACGAAAATTCTACGGGACGTATTTTGATTCCATGGGCCATCGGAAGCCCTGTTCATTATGCTGGATGGCACTGTTCTTGGTGTTTCAAACCAGAAGGGATTTATTACAAACTAGTATCAGCCCAGAATGGAGACTTTCCACGTTGGGGGGATTATGGGGAGAAACGGAAGTTAAGTTATATTAAAGACTTAATACGCACAGGGGGTTGGTTTGATGGGTCTGAACCAGACTACCCACCAACAGACCCCAAAGAGCATATGTATGCTCCCAAATACCTGCTGGACAACTATGACAAATATCACTACTTGCTGGAAAACCCATATGCAAAAGGCAAACGTTAATAGATACAGGGGTGATTCAAATGGGTGGTTTTAAGACCATGCTATATTTTGCATACAGCTCATGAGATGTGCACAACTTTCCTATTTTTCACTGCGAGTACAAAGTGCAACAGTCCTCAAGATAGTGGCCATCAGTCAGGCATAGAGCTTCAGACTGTCACCGGGACTGGAAACCactgtgcagggatgtgtaaatgTTCATTTCATATCCCTTCTATAAGTTTATTCACAATAAGTTCCTTATGTTATGATGCTGTTCAAAAAGTCTATGCTTCAAATGTAGCATTTTGTTTATCCTGAGAAGTgccttttacagtgtaaaaaaattgtacaatgtACCGATTGATCGACTGATGaaacattgataaaaaaaaaatcagaataatGTTCAGTACATAACTCCATCAGCCGTTttgaaaatatgtaatattgATAAATTGCAAGTCTTTGTGCAGACGGTA

Function

symbol description
mgat3a Predicted to enable glycosyltransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process. Predicted to act upstream of or within protein N-linked glycosylation. Predicted to be located in membrane. Is expressed in intestinal bulb and pharynx. Orthologous to human MGAT3 (beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase).

GO:

id name namespace
GO:0006044 N-acetylglucosamine metabolic process biological_process
GO:0006487 protein N-linked glycosylation biological_process
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-249 Predicted to enable glycosyltransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process. Predicted to act upstream of or within protein N-linked glycosylation. Predicted to be located in membrane. Is expressed in intestinal bulb and pharynx. Orthologous to human MGAT3 (beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase).

Ensembl:

ensembl_id ENSDARG00000038069

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051362 True 2063 mRNA 0.44 3 25237399 25268751

Neighbor

gene id symbol gene type direction distance location
XLOC_026340 mief1 coding downstream 89352 25136153 ~ 25148047 (-)
XLOC_026339 BX470254.1 coding downstream 102290 25132020 ~ 25135109 (-)
XLOC_026338 chadla coding downstream 117560 25108968 ~ 25119839 (-)
XLOC_026337 rbx1 coding downstream 129597 25101960 ~ 25107802 (-)
XLOC_026336 xpnpep3 coding downstream 150413 25059502 ~ 25086986 (-)
XLOC_026342 ddx5 coding upstream 1110 25269861 ~ 25275403 (-)
XLOC_026343 smurf2 coding upstream 13196 25281947 ~ 25369557 (-)
XLOC_026344 kpna2 coding upstream 101214 25369965 ~ 25377163 (-)
XLOC_026345 bptf coding upstream 110050 25378801 ~ 25421504 (-)
XLOC_026346 grb2b coding upstream 163668 25432419 ~ 25492495 (-)
XLOC_026332 BX569789.2 non-coding downstream 491518 24745766 ~ 24745881 (-)
XLOC_026329 CR790377.1 non-coding downstream 834130 24403149 ~ 24403269 (-)
XLOC_026325 CR751227.3 non-coding downstream 1419353 23817922 ~ 23818046 (-)
XLOC_026324 NA non-coding downstream 1493120 23740351 ~ 23744279 (-)
XLOC_026348 NA non-coding upstream 414133 25682884 ~ 25701218 (-)
XLOC_026350 NA non-coding upstream 671457 25940208 ~ 25950390 (-)
XLOC_026351 NA non-coding upstream 682474 25951225 ~ 25974082 (-)
XLOC_026352 NA non-coding upstream 715883 25984634 ~ 25988334 (-)
XLOC_026354 NA non-coding upstream 801517 26070268 ~ 26076085 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_00545816_00547683 NA coding CI01000034 null 545816 ~ 548514 (+)