XLOC_026385 (si:ch211-157c3.4)


Basic Information

Item Value
gene id XLOC_026385
gene name si:ch211-157c3.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 27642386 ~ 27647845 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051429
AGAAACTGGTTTCAGACTAGCCATCAGCAACAGTCTCAACGGGACAGTTTAAAGCCAAGCCAAAGACAGTATGAGTGCTGACGGAACTGGGACTCCCCCTCCGTATACTATACCAGTAGAGGATGGAAAGGGCTCCAATGTGAAGGTTTACCATGTGCACACTCCGTTCACCCCACAGAGCTCCACTTATGGAGCTTCTCATGCCCAGGTGGCGTCATCCAGACCTGTTCAGTCTCAGTCAACTGAAGCCAGAAACAAGTATGTCAGCTACGAGTCATATGAACTGGGTCGCAAACCAGCAATGGCCACCTGCACGTCCTGTCAACAGCAGGTCTTAACCAATGTCACCTACAAAGTGGGAGTTTATGCCTGGTTGATGTGCATACTCATATTCTTTTGTGGGTTTGTTTTGGGCTGCTGTCTGATCCCGTTTTTTATGAAGTTTTTCAAAGACGCCTATCACTCGTGCCCAAGATGCAATAAGATCTTGCATGTCGAAAAAAAGCGATGCTGCCACTGATCTATAACAAACATCAGTGGATGCTGCTCAGTTTAAACACTTCTCACATTTGTGTGGCACCTTACTCAACTATATGAAGGACTGGACTTTCAGACCAACACAGATGTCATCTAGTACAATCATACTTGTATAAACTAATGCTCTGCAACTATGAAGCTTTTGGTGTTCATCTGGTTTTATGCCTATAACGGACTCAGGGTTAGGGGTTCAGAGGGTCAAGATTTTTATGAAACCAAAAATGTGCACACATCATGCATAACATGATgttatgtaaatataattaatttgtttaataattgcACCATTTAATACAGTTGTTTTTATCCAAGTCCTAAAATCATATAAACAAATCAAGCATTAAGTTAGCCGGTCATACTTTACAATTGTGTATTATAGtttgtgtttactaacatgaacaaacaataaataatacacttGTATCAGTATTTTTCTCATATTTGTAATGTTAGAAAATAGTAATTCGTTGTTAGTTTGTGTTAACCCTTTAAGATGCACTGCTTGAAAATAAAGTTTTTGGCTCACATCTTGTATTGAATAATATACTGACACAACTCTCATTTATAGCaataagcaattaaaataatattgattaCCTATGGATAAAAGGTCACCGAAGTGATTATGATGCATGTTAAAGGGTTCACTTAAAATCTAACTTATGTGAATTAAGATTTTAATGATGCATTGGTAAATGCTGTActatgattaattaataaattatgtactagtcttgttcatgttagtaaatacattaccgTTAACTAAcgaaacctagattttttttttttttgatttagttCCTTTTTCTCACTGTTTTAAGAAATAGAATTTCCATTTTCTTAAAAACCCCTCGGAATATGAGGTGGCTTTGTTTAAAAGTGTTATATAGATCTGGAAGAGTCATGAATATTACATGAACTCCATGGGCAATTTAAGAATGCATGTTTTATaatctaaattaaatgtaaaagtcATTGTCCATTACATATTACAAACAAGTCACTGAAAAGCAATAGGGGCCTTTGAAATGGTTGAGAAATCAAAAAGATTAActtcaatgtttacattttaaatgaccaTACTGACAAAGCTCATATGTTtcttttaagcacatttttaccTCTGTAAAAAAAGTCTCTGTAGAACTCTACAATAATGTCTAAAATACCATGTGTGAATCTAAATGGAGCCGTTGTtacaataaaactgaaatatgtCTGTGCAATACCTTAAAA
>TCONS_00051430
GCGTTTGATCAGGATTGGAGTTGAACTCTGCGGTAGGGCAGATATCCAGCCACAGGGTTGAGGACTTCTGTTCTCTTAGGCAAATTTGTAAACAACAAGCCATCATAAAAAATTAACATGCATTCTAACTTATAGAATGTTTTAACAGTACCTTATGATTTGCTTTTGAAATTTACCCTTTCAGTCACCAGAATGCATTAGGTTTTACCCACCTCTTTAGCATATAAAATTTGACTATTGTCTAATTCACATACTTTATTTTGATTCAGCAGTTTAAAGCCAAGCCAAAGACAGTATGAGTGCTGACGGAACTGGGACTCCCCCTCCGTATACTATACCAGTAGAGGATGGAAAGGGCTCCAATGTGAAGGTTTACCATGTGCACACTCCGTTCACCCCACAGAGCTCCACTTATGGAGCTTCTCATGCCCAGGTGGCGTCATCCAGACCTGTTCAGTCTCAGTCAACTGAAGCCAGAAACAAGTATGTCAGCTACGAGTCATATGAACTGGGTCGCAAACCAGCAATGGCCACCTGCACGTCCTGTCAACAGCAGGTCTTAACCAATGTCACCTACAAAGTGGGAGTTTATGCCTGGTTGATGTGCATACTCATATTCTTTTGTGGGTTTGTTTTGGGCTGCTGTCTGATCCCGTTTTTTATGAAGTTTTTCAAAGACGCCTATCACTCGTGCCCAAGATGCAATAAGATCTTGCATGTCGAAAAAAAGCGATGCTGCCACTGATCTATAACAAACATCAGTGGATGCTGCTCAGTTTAAACACTTCTCACATTTGTGTGGCACCTTACTCAACTATATGAAGGACTGGACTTTCAGACCAACACAGATGTCATCTAGTACAATCATACTTGTATAAACTAATGCTCTGCAACTATGAAGCTTTTGGTGTTCATCTGGTTTTATGCCTATAACGGACTCAGGGTTAGGGGTTCAGAGGGTCAAGATTTTTATGAAACCAAAAATGTGCACACATCATGCATAACATGATgttatgtaaatataattaatttgtttaataattgcACCATTTAATACAGTTGTTTTTATCCAAGTCCTAAAATCATATAAACAAATCAAGCATTAAGTTAGCCGGTCATACTTTACA
>TCONS_00051431
ATCAGCAACAGTCTCAACGGGACAGCAGTTTAAAGCCAAGCCAAAGACAGTATGAGTGCTGACGGAACTGGGACTCCCCCTCCGTATACTATACCAGTAGAGGATGGAAAGGGCTCCAATGTGAAGGTTTACCATGTGCACACTCCGTTCACCCCACAGAGCTCCACTTATGGAGCTTCTCATGCCCAGGTGGCGTCATCCAGACCTGTCTCAGTCAACTGAAGCCAGAAACAAGTATGTCAGCTACGAGTCATATGAACTGGGTCGCAAACCAGCAATGGCCACCTGCACGTCCTGTCAACAGCAGGTCTTAACCAATGTCACCTACAAAGTGGGAGTTTATGCCTGGTTGATGTGCATACTCATATTCTTTTGTGGGTTTGTTTTGGGCTGCTGTCTGATCCCGTTTTTTATGAAGTTTTTCAAAGACGCCTATCACTCGTGCCCAAGATGCAATAAGATCTTGCATGTCGAAAAAAAGCGATGCTGCCACTGATCTATAACAAACATCAGTGGATGCTGCTCAGTTTAAACACTTCTCACATTTGTGTGGCACCTTACTCAACTATATGAAGGACTGGACTTTCAGACCAACACAGATGTCATCTAGTACAATCATACTTGTATAAACTAATGCTCTGCAACTATGAAGCTTTTGGTGTTCATCTGGTTTTATGCCTATAACGGACTCAGGGTTAGGGGTTCAGAGGGTCAAGATTTTTATGAAACCAAAAATGTGCACACATCATGCATAACATGATgttatgtaaatataattaatt
>TCONS_00051432
GATCAGGATTGGAGTTGAACTCTGCGTTTAAAGCCAAGCCAAAGACAGTATGAGTGCTGACGGAACTGGGACTCCCCCTCCGTATACTATACCAGTAGAGGATGGAAAGGGCTCCAATGTGAAGGTTTACCATGTGCACACTCCGTTCACCCCACAGAGCTCCACTTATGGAGCTTCTCATGCCCAGGTGGCGTCATCCAGACCTGTTCAGTCTCAGTCAACTGAAGCCAGAAACAAGTATGTCAGCTACGAGTCATATGAACTGGGTCGCAAACCAGCAATGGCCACCTGCACGTCCTGTCAACAGCAGGTCTTAACCAATGTCACCTACAAAGTGGGAGTTTATGCCTGGTTGATGTGCATACTCATATTCTTTTGTGGGTTTGTTTTGGGCTGCTGTCTGATCCCGTTTTTTATGAAGTTTTTCAAAGACGCCTATCACTCGTGCCCAAGATGCAATAAGATCTTGCATGTCGAAAAAAAGCGATGCTGCCACTGATCTATAACAAACATCAGTGGATGCTGCTCAGTTTAAACACTTCTCACATTTGTGTGGCACCTTACTCAACTATATGAAGGACTGGACTTTCAGACCAACACAGATGTCATCTAGTACAATCATACTTGTATAAACTAATGCTCTGCAACTATGAAGCTTTTGGTGTTCATCTGGTTTTATGCCTATAACGGACTCAGGGTTAGGGGTTCAGAGGGTCAAGATTTTTATGAAACCAAAAATGTGCACACATCATGC

Function

symbol description
si:ch211-157c3.4 Predicted to enable metal ion binding activity. Predicted to be located in endosome membrane and lysosomal membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8454 Predicted to enable metal ion binding activity. Predicted to be located in endosome membrane and lysosomal membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000087093

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051429 False 1776 mRNA 0.35 5 27642386 27647845
TCONS_00051430 False 1127 mRNA 0.40 4 27643260 27646076
TCONS_00051431 False 782 nonsense_mediated_decay 0.44 5 27643356 27647823
TCONS_00051432 True 754 mRNA 0.45 5 27643387 27646070

Neighbor

gene id symbol gene type direction distance location
XLOC_026384 NA coding downstream 40574 27595037 ~ 27601812 (-)
XLOC_026383 NA coding downstream 199893 27408273 ~ 27442493 (-)
XLOC_026382 NA coding downstream 351606 27288743 ~ 27290780 (-)
XLOC_026381 CR954963.2 coding downstream 558972 27083298 ~ 27083414 (-)
XLOC_026380 atf7ip2 coding downstream 570207 27058461 ~ 27072179 (-)
XLOC_026386 PDE6G coding upstream 58268 27706113 ~ 27713180 (-)
XLOC_026387 NA coding upstream 129517 27777362 ~ 27783292 (-)
XLOC_026388 dnase1 coding upstream 131130 27778975 ~ 27784457 (-)
XLOC_026389 abat coding upstream 184655 27832500 ~ 27880229 (-)
XLOC_026390 mettl22 coding upstream 236840 27884685 ~ 27915270 (-)
XLOC_026379 CR954963.1 non-coding downstream 584351 27045647 ~ 27058035 (-)
XLOC_026378 NA non-coding downstream 640979 27000787 ~ 27001407 (-)
XLOC_026391 NA non-coding upstream 268379 27916224 ~ 27927053 (-)
XLOC_026392 NA non-coding upstream 273942 27921787 ~ 27924016 (-)
XLOC_026394 NA non-coding upstream 796389 28444234 ~ 28502493 (-)
XLOC_026395 NA non-coding upstream 811489 28459334 ~ 28462351 (-)

Expression


Co-expression Network