XLOC_026379 (CR954963.1)


Basic Information

Item Value
gene id XLOC_026379
gene name CR954963.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 27045647 ~ 27058035 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051416
ATTAGTATACCTGAATTCTGTGTGGAAGACTTGAGTTGAATGTGTGCTGGTAAGGTAGGAATGCAAATTGTACAGGATTAAAACATCTGTCCTGAGGTCTGCTGTACAAAACGCGTTGAACCATCTCTGGGGTGGAAAACAGAAGCTGAATTATGGCCGTGAAGACGAATCTCTCTCCCTGCTTTAGACGGAAGAGctgaagaatgaaaacaaagaatcCCACACAGCACAAGATGGTGGCCAGTATCATGGTGGCCTGCACTGCCTGAAGATATGCTGATAAAGACAAAGACAACAAACACAAGCTGCCTTCCTGTGCTCTGCTGAGGGGAGGAACCAGGGGAGGAGAACCGTGAGACCAAAAACTCAAAACACCATGCCCACAAATCTGCGATTTGAACCAGGAAATGTGTTGAGCAGATGATTCAGATGCCATGAATACATTCAAGGGATACTTAGACAATATGTatgtgatttttttctctctcagttgaacactaaagaagaatTTGTCCACTGCCACAATACTTTTTTCTTCATAGTAGAATATTAATAACTTCCTaaaaattcattttatatttaatattttaaatgaattgagggtgagtaaatgacaaagTATATTTGATgaattattcattttcatagatTCAATTAAATGGTTTAATC

Function

GO:

id name namespace
GO:0008173 RNA methyltransferase activity molecular_function
GO:0140101 catalytic activity, acting on a tRNA molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097153

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051416 True 669 lncRNA 0.39 3 27045647 27058035

Neighbor

gene id symbol gene type direction distance location
XLOC_026378 NA coding downstream 44240 27000787 ~ 27001407 (-)
XLOC_026377 nubp1 coding downstream 66854 26931710 ~ 26978793 (-)
XLOC_026376 ciita coding downstream 124172 26908978 ~ 26921475 (-)
XLOC_026375 clec16a coding downstream 138991 26823788 ~ 26906656 (-)
XLOC_026374 pigq coding downstream 239615 26792546 ~ 26806032 (-)
XLOC_026380 atf7ip2 coding upstream 426 27058461 ~ 27072179 (-)
XLOC_026381 CR954963.2 coding upstream 25263 27083298 ~ 27083414 (-)
XLOC_026382 NA coding upstream 230708 27288743 ~ 27290780 (-)
XLOC_026383 NA coding upstream 350238 27408273 ~ 27442493 (-)
XLOC_026384 NA coding upstream 537002 27595037 ~ 27601812 (-)
XLOC_026372 NA non-coding downstream 365226 26663733 ~ 26680421 (-)
XLOC_026371 CR847568.1 non-coding downstream 382482 26663048 ~ 26663165 (-)
XLOC_026370 NA non-coding downstream 399014 26550201 ~ 26646633 (-)
XLOC_026368 NA non-coding downstream 629117 26411233 ~ 26416530 (-)
XLOC_026387 NA non-coding upstream 719327 27777362 ~ 27783292 (-)
XLOC_026391 NA non-coding upstream 858189 27916224 ~ 27927053 (-)

Expression


Co-expression Network