XLOC_026382


Basic Information

Item Value
gene id XLOC_026382
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 27288743 ~ 27290780 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051425
gcaaaactgtgtagaaCTGTGGCCCTGCAGGAATCTACTTTGAGACCAACTCTGCACACTCCTTGCAACGTTTCCCCAGAACCAATCTTTGTGAACCTGTGCATTTTTTGCAGAACAACAAATTTCATTTCACCTTTGGGAGCAAAATGTTTCTTCCTGAGGATTTATATGCCTATATGTTCTGTGAAGCGCCTGCACGGAGATAAGGCGGATGTGAAGGTTTGAAGCAATGCGCTAGTCGCCGGCATTAGCATTCACAACACCAGACTTCATGTCTTAGAGTGAAACTCCAGAGGAGCGGCTGAATTGATCCGCGCTGTGACTTTCTCTGTTTCTTTCTTGACTTTACAGCAAAGGTAGCAGTTTTTGCTACTAATTAAACTTACAGTGCAGAGAGCAGCTCAAAAGTTAGCCGAGCCGAGAGAAGACGAGGACGGTGAGGGATGGTCAACGCCAACACTTAATTTCATGCATCGCGGCTCCCTTCAATAACGGAGCAGGCCGTATGGATTAGCGCCATCCACTTCTGTCAAAATTTACCTTGAAGGGACCCGCCAGCGAATCCTGATAACCAAACTTGATAATCCACACAAAGCCTTCGACTCGCAGTATTCATGTTAATGAACTATCATTGTCTGCTCTGTGTGATGGATTTAATTACCTCCAGATGACCTAATGTTGGAAATATGATAGTGCTCATTATCTAAATATAAAGATGGAGAAAATAGCTCCGCCATGAAAGCATCTCTCTGACTAATTGGAGATTTTCCCCCAAATGGAGCCTCACCGCTGAGACACTGTCCATATGTTCGGATACGGAGTGGAATTCTCCGGAGAGAGTCTCGCTGCTAACTAAATTAGCCTGAAATTCAAATCACTGCCTGTTGAGTTGTGAAGGACAGTCAAAGCTCGACTACATGAAGTCAGCACATGCAGATAATGCAAGATTGTCTTTGCCCTCGCTGAAACGAGAGTGTTAGATCAAGATTTCAAACTAAAGTTAGTCCACATGAGTCATCCTTCTGCTTAttaaaagagatttttttaacagttttgttaCACACTGCAATGAGTCACTGCTTGTGTTGCATTTTGTCCTTAAACCAGCCTCTGGGGCAGCGCATGGATGGCTAACTTTGGGCCCGTGGCTGATTTACTCGCATATCGCTGTCCACAGTGTGGATTATATGATTTAAAGGTGGTGAAAtataattggggaaaaataattaGAGCTGCTTTAGAAACTGTCAATGCAGGCAATCTGAATGCTAATATCTCAAATGTGAAATTGTCAGAAACTCCCCAGGGCCGATAACTGCATGAGTGCATCGAAGATTTAACGTCACAACAAACAACCGCCAGCCTGAAAAAGCAACTGGGGCTCATCCACAATGATCAAATGTGTTCATTCTGCATGGATTAGCCTCTCAGCTATAGACATGTGTCAGGATGACCACAATTGTGCTTGACATGCTGCtttctggtgtttttttttttttttttttttggaaggactgCTAGGCAAATAGGATGTTTATTGGTACAGTATGTAGtggtgtaaataaatgaattccaAATGTTCAAATTATTGTAAAGGAGTAGTTTTTTCTTCTCAGTAATTGTACTTTATTAGGTAGCTTAAAATGTTAGGTTCTACTTGAGTGCAGTTTTACTATTGAAGTCActaaatttgtttagtttttcttgTTTACTGTGATTGGTCAAATAGAATAAtcattcctgtccaatcaaatcatgcATATAAAAATGGTATCAGATAGACCAAGCTCAGGACACTTTGTACAGTAAATGCAGCAAACGTATACAGTGTGAAAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051425 True 1837 lncRNA 0.41 2 27288743 27290780

Neighbor

gene id symbol gene type direction distance location
XLOC_026381 CR954963.2 coding downstream 205329 27083298 ~ 27083414 (-)
XLOC_026380 atf7ip2 coding downstream 216564 27058461 ~ 27072179 (-)
XLOC_026379 CR954963.1 coding downstream 230708 27045647 ~ 27058035 (-)
XLOC_026378 NA coding downstream 287336 27000787 ~ 27001407 (-)
XLOC_026377 nubp1 coding downstream 309950 26931710 ~ 26978793 (-)
XLOC_026383 NA coding upstream 117493 27408273 ~ 27442493 (-)
XLOC_026384 NA coding upstream 304257 27595037 ~ 27601812 (-)
XLOC_026385 si:ch211-157c3.4 coding upstream 351606 27642386 ~ 27647845 (-)
XLOC_026386 PDE6G coding upstream 415333 27706113 ~ 27713180 (-)
XLOC_026387 NA coding upstream 486582 27777362 ~ 27783292 (-)
XLOC_026372 NA non-coding downstream 608322 26663733 ~ 26680421 (-)
XLOC_026371 CR847568.1 non-coding downstream 625578 26663048 ~ 26663165 (-)
XLOC_026391 NA non-coding upstream 625444 27916224 ~ 27927053 (-)
XLOC_026392 NA non-coding upstream 631007 27921787 ~ 27924016 (-)
XLOC_026394 NA non-coding upstream 1153454 28444234 ~ 28502493 (-)

Expression


Co-expression Network