RNA id: TCONS_00051429


Basic Information

Item Value
RNA id TCONS_00051429
length 1776
RNA type mRNA
GC content 0.35
exon number 5
gene id XLOC_026385
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 27642386 ~ 27647845 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAACTGGTTTCAGACTAGCCATCAGCAACAGTCTCAACGGGACAGTTTAAAGCCAAGCCAAAGACAGTATGAGTGCTGACGGAACTGGGACTCCCCCTCCGTATACTATACCAGTAGAGGATGGAAAGGGCTCCAATGTGAAGGTTTACCATGTGCACACTCCGTTCACCCCACAGAGCTCCACTTATGGAGCTTCTCATGCCCAGGTGGCGTCATCCAGACCTGTTCAGTCTCAGTCAACTGAAGCCAGAAACAAGTATGTCAGCTACGAGTCATATGAACTGGGTCGCAAACCAGCAATGGCCACCTGCACGTCCTGTCAACAGCAGGTCTTAACCAATGTCACCTACAAAGTGGGAGTTTATGCCTGGTTGATGTGCATACTCATATTCTTTTGTGGGTTTGTTTTGGGCTGCTGTCTGATCCCGTTTTTTATGAAGTTTTTCAAAGACGCCTATCACTCGTGCCCAAGATGCAATAAGATCTTGCATGTCGAAAAAAAGCGATGCTGCCACTGATCTATAACAAACATCAGTGGATGCTGCTCAGTTTAAACACTTCTCACATTTGTGTGGCACCTTACTCAACTATATGAAGGACTGGACTTTCAGACCAACACAGATGTCATCTAGTACAATCATACTTGTATAAACTAATGCTCTGCAACTATGAAGCTTTTGGTGTTCATCTGGTTTTATGCCTATAACGGACTCAGGGTTAGGGGTTCAGAGGGTCAAGATTTTTATGAAACCAAAAATGTGCACACATCATGCATAACATGATgttatgtaaatataattaatttgtttaataattgcACCATTTAATACAGTTGTTTTTATCCAAGTCCTAAAATCATATAAACAAATCAAGCATTAAGTTAGCCGGTCATACTTTACAATTGTGTATTATAGtttgtgtttactaacatgaacaaacaataaataatacacttGTATCAGTATTTTTCTCATATTTGTAATGTTAGAAAATAGTAATTCGTTGTTAGTTTGTGTTAACCCTTTAAGATGCACTGCTTGAAAATAAAGTTTTTGGCTCACATCTTGTATTGAATAATATACTGACACAACTCTCATTTATAGCaataagcaattaaaataatattgattaCCTATGGATAAAAGGTCACCGAAGTGATTATGATGCATGTTAAAGGGTTCACTTAAAATCTAACTTATGTGAATTAAGATTTTAATGATGCATTGGTAAATGCTGTActatgattaattaataaattatgtactagtcttgttcatgttagtaaatacattaccgTTAACTAAcgaaacctagattttttttttttttgatttagttCCTTTTTCTCACTGTTTTAAGAAATAGAATTTCCATTTTCTTAAAAACCCCTCGGAATATGAGGTGGCTTTGTTTAAAAGTGTTATATAGATCTGGAAGAGTCATGAATATTACATGAACTCCATGGGCAATTTAAGAATGCATGTTTTATaatctaaattaaatgtaaaagtcATTGTCCATTACATATTACAAACAAGTCACTGAAAAGCAATAGGGGCCTTTGAAATGGTTGAGAAATCAAAAAGATTAActtcaatgtttacattttaaatgaccaTACTGACAAAGCTCATATGTTtcttttaagcacatttttaccTCTGTAAAAAAAGTCTCTGTAGAACTCTACAATAATGTCTAAAATACCATGTGTGAATCTAAATGGAGCCGTTGTtacaataaaactgaaatatgtCTGTGCAATACCTTAAAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8454 Predicted to enable metal ion binding activity. Predicted to be located in endosome membrane and lysosomal membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000151625

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051427 lncRNA downstream 42085 27599654 ~ 27600301 (-) False XLOC_026384
TCONS_00053034 lncRNA downstream 199893 27408273 ~ 27442493 (-) True XLOC_026383
TCONS_00053033 lncRNA downstream 199954 27408273 ~ 27442432 (-) False XLOC_026383
TCONS_00051425 lncRNA downstream 351606 27288743 ~ 27290780 (-) True XLOC_026382
TCONS_00051418 lncRNA downstream 575867 27058480 ~ 27066519 (-) False XLOC_026380
TCONS_00053035 lncRNA upstream 129517 27777362 ~ 27783292 (-) True XLOC_026387
TCONS_00051437 lncRNA upstream 219735 27867580 ~ 27880218 (-) True XLOC_026389
TCONS_00052462 lncRNA upstream 268379 27916224 ~ 27926037 (-) False XLOC_026391
TCONS_00052463 lncRNA upstream 273942 27921787 ~ 27924016 (-) True XLOC_026392
TCONS_00052465 lncRNA upstream 277735 27925580 ~ 27927053 (-) False XLOC_026391
TCONS_00051426 mRNA downstream 40574 27595037 ~ 27601812 (-) False XLOC_026384
TCONS_00051428 mRNA downstream 40842 27599678 ~ 27601544 (-) True XLOC_026384
TCONS_00051422 mRNA downstream 570207 27059279 ~ 27072179 (-) False XLOC_026380
TCONS_00051417 mRNA downstream 575852 27058461 ~ 27066534 (-) False XLOC_026380
TCONS_00051433 mRNA upstream 58268 27706113 ~ 27713180 (-) True XLOC_026386
TCONS_00051434 mRNA upstream 131130 27778975 ~ 27784457 (-) True XLOC_026388
TCONS_00051435 mRNA upstream 184655 27832500 ~ 27868183 (-) False XLOC_026389
TCONS_00051436 mRNA upstream 188222 27836067 ~ 27880229 (-) False XLOC_026389
TCONS_00051438 mRNA upstream 236840 27884685 ~ 27915270 (-) True XLOC_026390
TCONS_00051424 other downstream 558972 27083298 ~ 27083414 (-) True XLOC_026381
TCONS_00051423 other downstream 576266 27065385 ~ 27066120 (-) True XLOC_026380
TCONS_00051408 other downstream 979221 26663048 ~ 26663165 (-) True XLOC_026371
TCONS_00051368 other downstream 2367035 25274142 ~ 25275351 (-) True XLOC_026342
TCONS_00051354 other downstream 2555435 25079449 ~ 25086951 (-) True XLOC_026336
TCONS_00051457 other upstream 1211439 28859284 ~ 28859400 (-) True XLOC_026403
TCONS_00051462 other upstream 1604104 29251949 ~ 29252065 (-) True XLOC_026406
TCONS_00051465 other upstream 1904796 29552641 ~ 29552762 (-) True XLOC_026409
TCONS_00051466 other upstream 2007116 29654961 ~ 29663743 (-) False XLOC_026411
TCONS_00051468 other upstream 2007887 29655732 ~ 29663763 (-) True XLOC_026411

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU312233 True 111 TUCP 0.39 3 CI01000069 813235 ~ 954003 (-)