RNA id: TCONS_00051427


Basic Information

Item Value
RNA id TCONS_00051427
length 553
lncRNA type retained_intron
GC content 0.39
exon number 2
gene id XLOC_026384
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 27595037 ~ 27601812 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATTGCATCTTTTACTTTAAGTGTTGACATGCTATGAAATATTGGCATGTTAATGTActgaacaaatatttaaaaagtgtatATTTTGACTATTTTCTAATTTTTACATGATCTTTATAGACCCAATCTCAATGCTTTTCTGgctcttaatttatttaaatctgaCTTGCCTTTGCCATGCAAGCACCCCTGATTCTATTTCTATCTTGCAGATCGAGTCTGTCATCAGCAAGGACCGTCACTGTGGTCTCCGTTTCAAAATTCTGCAACAGCAGTAACTAATCTTTACAAAGAAAGTGTTGATGCACACAAGAGGAGCTTTGATTTAGGAATTCAGATCGGCCATCAGCGTCGAAATAAAGATGTTTTGGCCTGGGTGAAAAAGCGAAGGAGAACTATACGAAGGGAAGATTTGATAAGTTTCCTATGTGGTAAAGCACCACCTCCAAGGACTTCTAGAGCTGCCCCTAAAATGACTGTCATGTCTCCTATCCGGGCACCTTCATCGGACACAGTGTCATCTGTAGAGACTGATTTACAGCCCTTCTGTGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000151223

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053034 lncRNA downstream 157161 27408273 ~ 27442493 (-) True XLOC_026383
TCONS_00053033 lncRNA downstream 157222 27408273 ~ 27442432 (-) False XLOC_026383
TCONS_00051425 lncRNA downstream 308874 27288743 ~ 27290780 (-) True XLOC_026382
TCONS_00051418 lncRNA downstream 533135 27058480 ~ 27066519 (-) False XLOC_026380
TCONS_00051416 lncRNA downstream 541619 27045647 ~ 27058035 (-) True XLOC_026379
TCONS_00053035 lncRNA upstream 177061 27777362 ~ 27783292 (-) True XLOC_026387
TCONS_00051437 lncRNA upstream 267279 27867580 ~ 27880218 (-) True XLOC_026389
TCONS_00052462 lncRNA upstream 315923 27916224 ~ 27926037 (-) False XLOC_026391
TCONS_00052463 lncRNA upstream 321486 27921787 ~ 27924016 (-) True XLOC_026392
TCONS_00052465 lncRNA upstream 325279 27925580 ~ 27927053 (-) False XLOC_026391
TCONS_00051422 mRNA downstream 527475 27059279 ~ 27072179 (-) False XLOC_026380
TCONS_00051417 mRNA downstream 533120 27058461 ~ 27066534 (-) False XLOC_026380
TCONS_00051429 mRNA upstream 42085 27642386 ~ 27647845 (-) False XLOC_026385
TCONS_00051430 mRNA upstream 42959 27643260 ~ 27646076 (-) False XLOC_026385
TCONS_00051432 mRNA upstream 43086 27643387 ~ 27646070 (-) True XLOC_026385
TCONS_00051433 mRNA upstream 105812 27706113 ~ 27713180 (-) True XLOC_026386
TCONS_00051434 mRNA upstream 178674 27778975 ~ 27784457 (-) True XLOC_026388
TCONS_00051424 other downstream 516240 27083298 ~ 27083414 (-) True XLOC_026381
TCONS_00051423 other downstream 533534 27065385 ~ 27066120 (-) True XLOC_026380
TCONS_00051408 other downstream 936489 26663048 ~ 26663165 (-) True XLOC_026371
TCONS_00051368 other downstream 2324303 25274142 ~ 25275351 (-) True XLOC_026342
TCONS_00051354 other downstream 2512703 25079449 ~ 25086951 (-) True XLOC_026336
TCONS_00051431 other upstream 43055 27643356 ~ 27647823 (-) False XLOC_026385
TCONS_00051457 other upstream 1258983 28859284 ~ 28859400 (-) True XLOC_026403
TCONS_00051462 other upstream 1651648 29251949 ~ 29252065 (-) True XLOC_026406
TCONS_00051465 other upstream 1952340 29552641 ~ 29552762 (-) True XLOC_026409
TCONS_00051466 other upstream 2054660 29654961 ~ 29663743 (-) False XLOC_026411

Expression Profile

//