RNA id: TCONS_00053034


Basic Information

Item Value
RNA id TCONS_00053034
length 1500
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id XLOC_026383
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 27408273 ~ 27442493 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAACATTTGCACTGCACTAGCCTTAAATTTACAGCAACATATGAGCATTATGCAAGGAACCCACTCAAGAAAGGCTGACATAACTGGGATAAGACAAAAAGGCTTTGTTATTTGGTGAAATTGCATGAAGAGGGGCGCAGATGATGTTATTTAGCACATGGATTTGACAAGTTTGCATTCAGAGATTATATTATGCACATGGCTTAGTACTTTCCGGCTGAAAAAACTTGGTTGGTTTAGACTCATCTGCTTCATGCTTGTCTCAGAGCCTGAGATGTCAGGGATGCCACAAGCGAGTTGATCCGTTCCTCATCACGGCGCTGTGCTGATGGATGCAAATCAGCAATTCCCAACAGCTTTTTCTCCACACATGACATCCTTGAATCACAACGgctgaagaaaaaaactcattcaGAAAGGCGCTCTTTACCGGCCATCATCAACAAATGACCTTTTCATGTGAAGGATTCGTTTTTTTAAGGTTCTCCAGAGAACGTCCTTAAAATAGAGCATCTTATTTGATCATGTGCACATAAATCTACAGGCTCGCCGCTCCATGCTGAAAGAGACGAATGAGGAAGGAGCGTTTTGTAGTGTTCTACTTAGTCACTGATGCACTAACGCCACATGCATTTCACCACAGCCACGGCAGAGGAACATAAGCTGACATCATTTGATGGCACGACTGACAAGTTAATATGTTATTAAACGGATATCTTCTCCCAGCCGTTCTAATCATATTTTCGTTCACACTGTATCCTATTACCAGGATTTATCACAGGTCTTAAGGAGATTGAAATGAGGGAAAACGTGCATATGATTTATTATGTTGACAATACCTGTTCTGATAATGTGCACTGTCTTCTTATCTCTATGTTAAATAACACAATGTGGTCCGCCTGGGACTTTCTATGCAGTGGGTTATTATTTTATCACATAGGTTGCTTTTGAAAAAGAGTTCTGATGTTAAAGCAGATTGGGAAGCTTATTAAAGAAAGGTGTGCAGTTACATTGTCAAGAGTATTTTTATAAGGTGGATGAAAATGGCAATAAAACCCCATAGACTTGAATGCTAAAGACTCATATCTAGGGATCTGAATATCATAAAGACATGTTAGTTTTTCAATAAAAACTCAGAAGAATAGCCTGACAAATCTATGCAGAAATCATTTTGAAGCGagaaaaatattgttattttaatgtggaagggatagtttaaccaaaaataaaatttgactgaAGTGGATTGAAActtttatgggtttctttcttctgttcaatacaaaataagatagtttgaagaaagttAAAAGCCTGTGCCCATTGACTTCCCTAATAAGAAAAagaattactatggaagtcaataggtttcttcagaatatcgtctttgtgttcaacagattaaaTAAACCCAAGCAGTGTTGGAACAAATTAAATTTCGTTTGTGTGAactattaaaaaactattttagaagaaattatttttattcttaccTTAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051425 lncRNA downstream 117493 27288743 ~ 27290780 (-) True XLOC_026382
TCONS_00051418 lncRNA downstream 341754 27058480 ~ 27066519 (-) False XLOC_026380
TCONS_00051416 lncRNA downstream 350238 27045647 ~ 27058035 (-) True XLOC_026379
TCONS_00052461 lncRNA downstream 406866 27000787 ~ 27001407 (-) True XLOC_026378
TCONS_00052460 lncRNA downstream 727852 26663733 ~ 26680421 (-) True XLOC_026372
TCONS_00051427 lncRNA upstream 157161 27599654 ~ 27600301 (-) False XLOC_026384
TCONS_00053035 lncRNA upstream 334869 27777362 ~ 27783292 (-) True XLOC_026387
TCONS_00051437 lncRNA upstream 425087 27867580 ~ 27880218 (-) True XLOC_026389
TCONS_00052462 lncRNA upstream 473731 27916224 ~ 27926037 (-) False XLOC_026391
TCONS_00052463 lncRNA upstream 479294 27921787 ~ 27924016 (-) True XLOC_026392
TCONS_00051422 mRNA downstream 336094 27059279 ~ 27072179 (-) False XLOC_026380
TCONS_00051417 mRNA downstream 341739 27058461 ~ 27066534 (-) False XLOC_026380
TCONS_00051426 mRNA upstream 152544 27595037 ~ 27601812 (-) False XLOC_026384
TCONS_00051428 mRNA upstream 157185 27599678 ~ 27601544 (-) True XLOC_026384
TCONS_00051429 mRNA upstream 199893 27642386 ~ 27647845 (-) False XLOC_026385
TCONS_00051430 mRNA upstream 200767 27643260 ~ 27646076 (-) False XLOC_026385
TCONS_00051432 mRNA upstream 200894 27643387 ~ 27646070 (-) True XLOC_026385
TCONS_00051424 other downstream 324859 27083298 ~ 27083414 (-) True XLOC_026381
TCONS_00051423 other downstream 342153 27065385 ~ 27066120 (-) True XLOC_026380
TCONS_00051408 other downstream 745108 26663048 ~ 26663165 (-) True XLOC_026371
TCONS_00051368 other downstream 2132922 25274142 ~ 25275351 (-) True XLOC_026342
TCONS_00051354 other downstream 2321322 25079449 ~ 25086951 (-) True XLOC_026336
TCONS_00051431 other upstream 200863 27643356 ~ 27647823 (-) False XLOC_026385
TCONS_00051457 other upstream 1416791 28859284 ~ 28859400 (-) True XLOC_026403
TCONS_00051462 other upstream 1809456 29251949 ~ 29252065 (-) True XLOC_026406
TCONS_00051465 other upstream 2110148 29552641 ~ 29552762 (-) True XLOC_026409
TCONS_00051466 other upstream 2212468 29654961 ~ 29663743 (-) False XLOC_026411