RNA id: TCONS_00051437


Basic Information

Item Value
RNA id TCONS_00051437
length 666
lncRNA type retained_intron
GC content 0.38
exon number 2
gene id XLOC_026389
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 27832500 ~ 27880229 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCTTTCTCGTGGTTCCACCGAAAACCTGCTAGGTTAAATTCTCGAACGTCAGACACGAAGGTGAAGTGAAAGGCAGGTGCTGtgtgctgtctctctctctctctctgtctgtgtctcGGTGAGTGCTACACATGGCTTCCTCACTCCTGACCCGTCAGCTGGCTCTTTCCCTCCAGCAAAACCTGCGTCTCGCTGCTCCAGGTAAAAATGGATACTATTAAGTCTGAAAAGCTTGATGACATTCCACTTAAACTGACAATACATTTACAGTGCCTGTAGAAATTCATCATACCCCTTTGAAACAATTACTTTTTGTCACacagcctgaaatcaaatcactttCCAAACAACTTTTCcagcctttgaaatgtttttgtagccttCTCCTAACCTGTGCCTTTTTACGACTTTATCCTAAAGGTTCTTTGAAAGCAGGGTGCAATGTGAGTAAAGATTTTCACAGAGTATGGTTTTTACTGATGGGCACAGTACAACAACAATATGATTCTGATATTAGCACGATTTAGACAAGACTCCGATTAAGAATCTACATTTTAAACAGAGATTTTTAATTACCTAAACTTGTACTCAAAGTAAAATCAAGTCCAAttaggacatatatatatatatatatatatatatatatatatatatatattttagt

Function

GO:

id name namespace
GO:0009448 gamma-aminobutyric acid metabolic process biological_process
GO:0009450 gamma-aminobutyric acid catabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0003867 4-aminobutyrate transaminase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008483 transaminase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00640 Propanoate metabolism
ko00650 Butanoate metabolism
ko00250 Alanine, aspartate and glutamate metabolism
ko00280 Valine, leucine and isoleucine degradation
ko00410 beta-Alanine metabolism
ko04727 GABAergic synapse
ko01007 Amino acid related enzymes

ZFIN:

id description
ZDB-GENE-031006-4 Predicted to enable 4-aminobutyrate transaminase activity and pyridoxal phosphate binding activity. Predicted to be involved in gamma-aminobutyric acid catabolic process. Predicted to act upstream of or within gamma-aminobutyric acid metabolic process and neurotransmitter catabolic process. Predicted to be active in mitochondrion. Is expressed in blood; liver; nervous system; pronephric duct; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease; GABA aminotransferase deficiency; and Huntington's disease. Orthologous to human ABAT (4-aminobutyrate aminotransferase).

Ensembl:

ensembl_id ENSDART00000151385

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053035 lncRNA downstream 84288 27777362 ~ 27783292 (-) True XLOC_026387
TCONS_00051427 lncRNA downstream 267279 27599654 ~ 27600301 (-) False XLOC_026384
TCONS_00053034 lncRNA downstream 425087 27408273 ~ 27442493 (-) True XLOC_026383
TCONS_00053033 lncRNA downstream 425148 27408273 ~ 27442432 (-) False XLOC_026383
TCONS_00051425 lncRNA downstream 576800 27288743 ~ 27290780 (-) True XLOC_026382
TCONS_00052462 lncRNA upstream 36006 27916224 ~ 27926037 (-) False XLOC_026391
TCONS_00052463 lncRNA upstream 41569 27921787 ~ 27924016 (-) True XLOC_026392
TCONS_00052465 lncRNA upstream 45362 27925580 ~ 27927053 (-) False XLOC_026391
TCONS_00052464 lncRNA upstream 45362 27925580 ~ 27927053 (-) True XLOC_026391
TCONS_00051444 lncRNA upstream 165123 28045341 ~ 28068211 (-) False XLOC_026393
TCONS_00051434 mRNA downstream 83123 27778975 ~ 27784457 (-) True XLOC_026388
TCONS_00051433 mRNA downstream 154400 27706113 ~ 27713180 (-) True XLOC_026386
TCONS_00051429 mRNA downstream 219735 27642386 ~ 27647845 (-) False XLOC_026385
TCONS_00051430 mRNA downstream 221504 27643260 ~ 27646076 (-) False XLOC_026385
TCONS_00051432 mRNA downstream 221510 27643387 ~ 27646070 (-) True XLOC_026385
TCONS_00051438 mRNA upstream 4467 27884685 ~ 27915270 (-) True XLOC_026390
TCONS_00051439 mRNA upstream 102051 27982269 ~ 28250722 (-) False XLOC_026393
TCONS_00051440 mRNA upstream 102051 27982269 ~ 28258462 (-) False XLOC_026393
TCONS_00051441 mRNA upstream 103940 27984158 ~ 28075756 (-) False XLOC_026393
TCONS_00051442 mRNA upstream 105787 27986005 ~ 28048475 (-) False XLOC_026393
TCONS_00051431 other downstream 219757 27643356 ~ 27647823 (-) False XLOC_026385
TCONS_00051424 other downstream 784166 27083298 ~ 27083414 (-) True XLOC_026381
TCONS_00051423 other downstream 801460 27065385 ~ 27066120 (-) True XLOC_026380
TCONS_00051408 other downstream 1204415 26663048 ~ 26663165 (-) True XLOC_026371
TCONS_00051368 other downstream 2592229 25274142 ~ 25275351 (-) True XLOC_026342
TCONS_00051457 other upstream 979066 28859284 ~ 28859400 (-) True XLOC_026403
TCONS_00051462 other upstream 1371731 29251949 ~ 29252065 (-) True XLOC_026406
TCONS_00051465 other upstream 1672423 29552641 ~ 29552762 (-) True XLOC_026409
TCONS_00051466 other upstream 1774743 29654961 ~ 29663743 (-) False XLOC_026411
TCONS_00051468 other upstream 1775514 29655732 ~ 29663763 (-) True XLOC_026411

Expression Profile

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