RNA id: TCONS_00052464


Basic Information

Item Value
RNA id TCONS_00052464
length 659
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id XLOC_026391
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 27916224 ~ 27927053 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAATATGATTAATATACGTTAGGCTTCCCGAACCCCCTGTGGctacccaacaaacacacaacgttgcctcaacgtagcgaccttcctacaacgttgtaccaacattgtaaaaaggttgaggattctacgttgttgctaaaggttgtcacaacgatgtcataaggttgccatttaaacatcatGAGGGTCGCATGCTTTAGGTTGTGCTTAGGTGGCGTGGACgaccactgtacaacatttactggtcacagctgaatcagtttaaatttcaacaagccgtcgtctcattcatcaacgaccgaggagacGCTATTTTTACATGGAGAATGTTTTCAGCTGTTGAATTCACCTCATATCAGTGTAGCTGTAATTCCTTATCTATGGAAAGAAGAATTGGATGAGGTAAGAAGTATACTACTCTATTTACTGTTAAATGTAGTTATGTTACCTAAAACAGCATGTCcataatgtggaaaatagatcatgcttatgaaaaattactttattattttgtacagctgttattgaaatgacactaagtTTAACATTCCATTTACAGTGAGCAACGCCACAACTACAGGGCCTGttctttctcttctcataatttaaGTAAGTATTCGGAGACTAACTCTGACTTCTGTTAACTAAAACCTGTTTT

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0042246 tissue regeneration biological_process
GO:0031099 regeneration biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052463 lncRNA downstream 1564 27921787 ~ 27924016 (-) True XLOC_026392
TCONS_00051437 lncRNA downstream 45362 27867580 ~ 27880218 (-) True XLOC_026389
TCONS_00053035 lncRNA downstream 142288 27777362 ~ 27783292 (-) True XLOC_026387
TCONS_00051427 lncRNA downstream 325279 27599654 ~ 27600301 (-) False XLOC_026384
TCONS_00053034 lncRNA downstream 483087 27408273 ~ 27442493 (-) True XLOC_026383
TCONS_00051444 lncRNA upstream 118288 28045341 ~ 28068211 (-) False XLOC_026393
TCONS_00051447 lncRNA upstream 517181 28444234 ~ 28502493 (-) True XLOC_026394
TCONS_00053036 lncRNA upstream 532281 28459334 ~ 28462351 (-) True XLOC_026395
TCONS_00051450 lncRNA upstream 768709 28695762 ~ 28697048 (-) False XLOC_026397
TCONS_00051451 lncRNA upstream 768709 28695762 ~ 28698846 (-) False XLOC_026397
TCONS_00051438 mRNA downstream 10310 27884685 ~ 27915270 (-) True XLOC_026390
TCONS_00051436 mRNA downstream 45351 27836067 ~ 27880229 (-) False XLOC_026389
TCONS_00051435 mRNA downstream 57397 27832500 ~ 27868183 (-) False XLOC_026389
TCONS_00051434 mRNA downstream 141123 27778975 ~ 27784457 (-) True XLOC_026388
TCONS_00051433 mRNA downstream 212400 27706113 ~ 27713180 (-) True XLOC_026386
TCONS_00051439 mRNA upstream 55216 27982269 ~ 28250722 (-) False XLOC_026393
TCONS_00051440 mRNA upstream 55216 27982269 ~ 28258462 (-) False XLOC_026393
TCONS_00051441 mRNA upstream 57105 27984158 ~ 28075756 (-) False XLOC_026393
TCONS_00051442 mRNA upstream 58952 27986005 ~ 28048475 (-) False XLOC_026393
TCONS_00051443 mRNA upstream 112482 28039535 ~ 28120092 (-) False XLOC_026393
TCONS_00051431 other downstream 277757 27643356 ~ 27647823 (-) False XLOC_026385
TCONS_00051424 other downstream 842166 27083298 ~ 27083414 (-) True XLOC_026381
TCONS_00051423 other downstream 859460 27065385 ~ 27066120 (-) True XLOC_026380
TCONS_00051408 other downstream 1262415 26663048 ~ 26663165 (-) True XLOC_026371
TCONS_00051368 other downstream 2650229 25274142 ~ 25275351 (-) True XLOC_026342
TCONS_00051457 other upstream 932231 28859284 ~ 28859400 (-) True XLOC_026403
TCONS_00051462 other upstream 1324896 29251949 ~ 29252065 (-) True XLOC_026406
TCONS_00051465 other upstream 1625588 29552641 ~ 29552762 (-) True XLOC_026409
TCONS_00051466 other upstream 1727908 29654961 ~ 29663743 (-) False XLOC_026411
TCONS_00051468 other upstream 1728679 29655732 ~ 29663763 (-) True XLOC_026411

Expression Profile

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