XLOC_026411 (BX571960.2)


Basic Information

Item Value
gene id XLOC_026411
gene name BX571960.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29654961 ~ 29671653 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051466
ATTTAATTTCCCCTAGTTTCTCTTCATTGCAGGTGGATAGACGTGCAGCACAATGGAACGTGTTAACAATTATTTGTCTAAATATAAGGGATATATTTTTGCAAAAGGTGAAGCCACTGCGGAGTACATTGACTCTCTGCAACATTTTGAGATTCGTGACAGTGATGTCTTTTTGGTGACGTACCCCAAGTCAGgtACAATATGGGTGCAGAACATCATAAATTTAGTTTGTGAGGACTCGCttacagaaaaaactaaatatccCAACAATCTTGAGCAGATGCCATGGTTAGAGTACCGTGAAGGCCGTGCTGACTATTCTCTGCGTCCATCTCCAAGACTATTTGCCACTCATCTCATACCTAGACTGATGCCACAAGGCTTAAAAAACAAGAAGGGAAAgCggaaaccagcaacaatcaagaatgatTGAATTTTCGATGGCATGGCTATGCAATCAAAACATGTCATAATAATGGAAACAATGGGAATGAACATAAtaaaagATTATATATGTGAGAAGAAATCCAAAAGACAACGCAGTGTCATATTTCCACTTTTCCCACGTCTGGGCCAAAGTTGAGACCCCGAAGAGCTTTGAGGACTTTCTGCAGCAGTATCTAGCAGGAAATGTTGGCGGTTCGTCTTGGTTTGATCACGTCAAAGAATGGTACAAAGAAAAGGAGAACTACGACATACTTTTCCTGTCATACGAGGACATGATCATTGATCTCAGGACGGCAGTTGAGAAAGTCAGCAGATTCTTGGGGAAAAATCTTGATGCTGCTGCTGTCGCACGTATTGTGGAAAAAGCCACGTTTAAAAACATGAAGCAGGACCCCAAGGCCAACTATGAATTTCTCCCCAACACTGTGCTGCTCAAGCCTCAATTCTTGCGCAAAGGCACTGTAGGGGATTGGAAAAACACATTCACCGTGTCACAAAGCGAGATGTTTGACCAGATATTTGAAGAAAGGATGAAAAACGTACCATTGAACTTCATCTTTGATTTAGACACCAAAACAAACCAGAAGTAGTCACATAAATAACCAAAGCATTGTTTGTCTTGTGGGCATTAAGATGTTTTACTGGTTTATGTAAATGTCCAaagaaaaatctaattttgtGCTTCTTCTCAATTACAGCTAGTTTCTACATTGACTAATGCATCACTAAAATCCACATTTTTGACACTTGACCACACAGTTCTTATGCTGCACGTGTCGTCATCCTTCGTCTCAAAATAATACGTTTTTCTTTTATTCCAAAAATCTttagaatgtgtatatatattaaatctaaaaaaacttTGGGTTagaaatgtataattaaatatttaatttgttcaaaTTCAAAGGATTTTTTTAAACCCTCAGATCTATGCCAAATATTGTCAATTGACacttatgactgattttgtggtccagTCACATTTGTATTTAGCAATAAGGATTCATGAAATCATCAATATATTGCTATTTTCCATCATATTTAGAAACTATAGAAGCCTGTTTCTGCGAGGTAAGAAAATAACTGATGccttaaaattacaattattagacaaaaagttaaataaaaattatgactTAAGTTGAATTTATGACTTCGAGACCTGTGACTTATGactaaaaatatgataaaaagtaGAAATTATGACTCCTTTCAAAATTACAAAAGTTGAAACTATGACTTTAGTCAAAGGTATgagaaaattataaaacaaaattatgaCTTTAAAAAGTCAAAGTTATGACTTagtaggtcaaaattattagataaaaatgaaaattgactatAAAAAGTCATAGTTAAGGCTTAAGTCATGAGATTTAGAgaaaagactttttaaatattatagacaaaattgtgatttgattaaaaattttaaattatgagaaaaaaaattatgacttAGTAAGTAAATTGTAAAGTCGTCATTTCTACTTTTAAGTGTCATACTAATTTAAAATCATGAGATACAAAGtacaaattataatttaaaaaattgaaagttatgacttaaaaaaaataaataaattatgagataaaaagaCAATTATTATTTTCAAGCTCTGACTCTACGGTATCTTCCAAGATATTTTGCCTCTTTTAGGGTTAACATGCACTGTGGATTAAAAAGCATTAAACTACTTATGCCCAACACAACTTTATGCAAATTTCAGACCATTATTTTAATTTGACATATTTAGGAGCTTCAAGAAATAGACTTCATCAGTTTGTCTGATCCATTTAAGTCCATGTTTTAACAAGCAAGTTTAAATTGCAATCATCATTAGTATGGAAAAGAAGGTTATTACCATCAAGCTCCAGAACTGAACTTGTGATGATTAAACTCCACAACTAAGCTG
>TCONS_00051467
acgccaactaaccccttcttgctgtgaggtgacagttggGTAAGACatctaaatttaaaacttttttaaaaaaattaagggaCCAAAGAATGCATAAATTGTATAATTGTAacttaaatcaaatttaaatctAAAACTTAAAAATGGTATATTTTAGCCATTACATTTATTTGACATATGAGCAATAGGTAAATGTGGGTTTTTATAGCAAAAGCTTTGTAAAATACTATTATTAACAATTCAGTTTTGTCCGTTACGAGGTTGAGAATAAAGGGTGTCCAAATaagaataaaacagaaaataaaggcTTTAATGCCTGAGCTGggaaaacatgatttttaaaaaaatttatttaaattgtgccTAATTatgtaggttatttattaaaatataatcaatacacttttaaaaattaagtttgcTCAAGCTGAAATATTATCGAATGGCAGGAATGACCCACAAATCATTAATCATCGGATCAATGTACCAACAATAAACGCGTGTCGCTCACAAAATAATATAACGTTAGTTTTGTTGTCAAGTTAACGCTGTGTTAACTGTATCAGTTACATATTTGAAGTAATGACGGCCTCTGGCGGTGAGTTGTGAAAGTTGCAAGAGTACTTTTTCAATCTTTTCCTTTTCCAGCTTTCACTGTTGTTTGCAGCTCAGAAGAGAGTTACTTCCGCCTTCATCGAGAGGAATCTTGTTGCTCTGATTGTCCCCAGCCCATCCTTTCTGCTCCAcacctgaaaaaaaacaaacaagcgaaAATAATGATAATGCACTTGCAGGAATTAGCTGCATATTTTTTGTGACAACATTGACAACAGTTCTCCAAATATTTGCTGGTCTGGCCTGTTGAAAAGTATTATGGCTACGTTAAAAAAGCAACTAAACTAACTACGCCAGACTTGTTGATTTGCAGCTTAAATATCTTTAACTCGTAGTAAAAGACAGCAAAAACTGGGCGATAATCTAACTTAAATACAACAACCCTGCTTAGGCTAATACTGTAAGTTTTGCAGTGATAGTTACCTGGAGGAGCAGGAAAGACTGAAAACGACGTCGAGGTGTTTTTGCCCCCACACACTTTCTCTTCATTGCAGGTGGATAGACGTGCAGCACAATGGAACGTGTTAACAATTATTTGTCTAAATATAAGGGATATATTTTTGCAAAAGGTGAAGCCACTGCGGAGTACATTGACTCTCTGCAACATTTTGAGATTCGTGACAGTGATGTCTTTTTGGTGACGTACCCCAAGTCAGgtACAATATGGGTGCAGAACATCATAAATTTAGTTTGTGAGGACTCGCttacagaaaaaactaaatatccCAACAATCTTGAGCAGATGCCATGGTTAGAGTACCGTGAAGGCCGTGCTGACTATTCTCTGCGTCCATCTCCAAGACTATTTGCCACTCATCTCATACCTAGACTGATGCCACAAGGCTTAAAAAACAAGAAGGGAAAgATTATATATGTGAGAAGAAATCCAAAAGACAACGCAGTGTCATATTTCCACTTTTCCCACGTCTGGGCCAAAGTTGAGACCCCGAAGAGCTTTGAGGACTTTCTGCAGCAGTATCTAGCAGGAAATGTTGGCGGTTCGTCTTGGTTTGATCACGTCAAAGAATGGTACAAAGAAAAGGAGAACTACGACATACTTTTCCTGTCATACGAGGACATGATCATTGATCTCAGGACGGCAGTTGAGAAAGTCAGCAGATTCTTGGGGAAAAATCTTGATGCTGCTGCTGTCGCACGTATTGTGGAAAAAGCCACGTTTAAAAACATGAAGCAGGACCCCAAGGCCAACTATGAATTTCTCCCCAACACTGTGCTGCTCAAGCCTCAATTCTTGCGCAAAGGCACTGTAGGGGATTGGAAAAACACATTCACCGTGTCACAAAGCGAGATGTTTGACCAGATATTTGAAGAAAGGATGAAAAACGTACCATTGAACTTCATCTTTGATTTAGACACCAAAACAAACCAGAAGTAGTCACATAAATAACCAAAGCATTGTTTGTCTTGTGGGCATTAAGATGTTTTACTGGTTTATGTAAATGTCCAaagaaaaatctaattttgtGCTTCTTCTCAATTACAGCTAGTTTCTACATTGACTAATGCATCACTAAAATCCACATTTTTGACACTTGACCACACAGTTCTTATGCTGCACGTGTCGTCATCCTTCGTCTCAAAATAATACGTTTTTCTTTTATTCCAAAAATCTttagaatgtgtatatatattaaatctaaaaaaacttTGGGTTagaaatgtataattaaatatttaatttgttcaaaTTCAAAGGATTTTTTTAAACCCTCAGATCTATGCCAAATATTGTCAATTGACacttatgactgattttgtggtccagTCACATTTGTATTTAGCAATAAGGATTCATGAAATCATCAATATATTGCTATTTTCCATCATATTTAGAAACTATAGAAGCCTGTTTCTGCGAGGTAAGAAAATAACTGATGccttaaaattacaattattagacaaaaagttaaataaaaattatgactTAAGTTGAATTTATGACTTCGAGACCTGTGACTTATGactaaaaatatgataaaaagtaGAAATTA
>TCONS_00051468
GAACATTGATTCCAAAGGTCATTTAATTTCCCCTAGTTTCTCTTCATTGCAGGTGGATAGACGTGCAGCACAATGGAACGTGTTAACAATTATTTGTCTAAATATAAGGGATATATTTTTGCAAAAGGTGAAGCCACTGCGGAGTACATTGACTCTCTGCAACATTTTGAGATTCGTGACAGTGATGTCTTTTTGGTGACGTACCCCAAGTCAGgtACAATATGGGTGCAGAACATCATAAATTTAGTTTGTGAGGACTCGCttacagaaaaaactaaatatccCAACAATCTTGAGCAGATGCCATGGTTAGAGTACCGTGAAGGCCGTGCTGACTATTCTCTGCGTCCATCTCCAAGACTATTTGCCACTCATCTCATACCTAGACTGATGCCACAAGGCTTAAAAAACAAGAAGGGAAAgATTATATATGTGAGAAGAAATCCAAAAGACAACGCAGTGTCATATTTCCACTTTTCCCACGTCTGGGCCAAAGTTGAGACCCCGAAGAGCTTTGAGGACTTTCTGCAGCAGTATCTAGCAGGAAATGTTGGCGGTTCGTCTTGGTTTGATCACGTCAAAGAATGGTACAAAGAAAAGGAGAACTACGACATACTTTTCCTGTCATACGAGGACATGATCATTGATCTCAGGACGGCAGTTGAGAAAGTCAGCAGATTCTTGGGGAAAAATCTTGATGCTGCTGCTGTCGCACGTATTGTGGAAAAAGCCACGTTTAAAAACATGAAGCAGGACCCCAAGGCCAACTATGAATTTCTCCCCAACACTGTGCTGCTCAAGCCTCAATTCTTGCGCAAAGGCACTGTAGGGGATTGGAAAAACACATTCACCGTGTCACAAAGCGAGATGTTTGACCAGATATTTGAAGAAAGGATGAAAAACGTACCATTGAACTTCATCTTTGATTTAGACACCAAAACAAACCAGAAGTAGTCACATAAATAACCAAAGCATTGTTTGTCTTGTGGGCATTAAGATGTTTTACTGGTTTATGTAAATGTCCAaagaaaaatctaattttgtGCTTCTTCTCAATTACAGCTAGTTTCTACATTGACTAATGCATCACTAAAATCCACATTTTTGACACTTGACCACACAGTTCTTATGCTGCACGTGTCGTCATCCTTCGTCTCAAAATAATACGTTTTTCTTTTATTCCAAAAATCTttagaatgtgtatatatattaaatctaaaaaaacttTGGGTTagaaatgtataattaaatatttaatttgttcaaaTTCAAAGGATTTTTTTAAACCCTCAGATCTATGCCAAATATTGTCAATTGACacttatgactgattttgtggtccagTCACATTTGTATTTAGCAATAAGGATTCATGAAATCATCAATATATTGCTATTTTCCATCATATTTAGAAACTATAGAAGCCTGTTTCTGCGAGGTAAGAAAATAACTGATGccttaaaattacaattattagacaaaaagttaaataaaaattatgactTAAGTTGAATT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-061207-52 Enables sulfotransferase activity. Predicted to be involved in sulfation. Predicted to be active in cytoplasm. Is expressed in female organism; male organism; and unfertilized egg. Human ortholog(s) of this gene implicated in several diseases, including breast cancer; gastrointestinal system cancer (multiple); lung cancer (multiple); reproductive organ cancer (multiple); and urinary bladder cancer. Orthologous to human SULT1A1 (sulfotransferase family 1A member 1).

Ensembl:

ensembl_id ENSDARG00000009885 ENSDARG00000103130

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051466 False 2369 TEC 0.33 7 29654961 29663743
TCONS_00051467 False 2627 mRNA 0.36 7 29655677 29671653
TCONS_00051468 True 1515 TEC 0.37 6 29655732 29663763

Neighbor

gene id symbol gene type direction distance location
XLOC_026410 NA coding downstream 29026 29623117 ~ 29625935 (-)
XLOC_026409 BX571960.1 coding downstream 102199 29552641 ~ 29552762 (-)
XLOC_026408 cyth4a coding downstream 146002 29487300 ~ 29508959 (-)
XLOC_026407 NA coding downstream 272356 29376613 ~ 29382605 (-)
XLOC_026406 BX005369.2 coding downstream 402896 29251949 ~ 29252065 (-)
XLOC_026412 si:ch73-233k15.2 coding upstream 2655 29674308 ~ 29688399 (-)
XLOC_026413 BX901883.4 coding upstream 41558 29713211 ~ 29717145 (-)
XLOC_026414 BX901883.6 coding upstream 98489 29770142 ~ 29770258 (-)
XLOC_026415 NA coding upstream 163512 29835165 ~ 29863606 (-)
XLOC_026416 rpl3 coding upstream 195560 29867213 ~ 29871364 (-)
XLOC_026405 BX510989.2 non-coding downstream 745013 28899595 ~ 28909948 (-)
XLOC_026417 BX901883.1 non-coding upstream 195751 29867404 ~ 29867540 (-)
XLOC_026418 NA non-coding upstream 196982 29868635 ~ 29868732 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_02042680_02044541 NA coding CI01000069 null 2041983 ~ 2045548 (-)