XLOC_026416 (rpl3)


Basic Information

Item Value
gene id XLOC_026416
gene name rpl3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29867213 ~ 29871364 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051477
AGACACAAGTTGTGACGCATACACGTCGAACGTGCTTCCAGCTTTATAAGGAAGCGCCGCATTCCTTTCGCCCTCTTTTAATCGGACAGGAGACGAAATGTCTCACCGTAAATTTTCGGCCCCACGCCACGGCTCTCTGGGTTTCCTGCCCCGCAAGAGGTGCAAACGCCATCGTGGCAAGGTGAAGAGTTTCCCCAAAGATGATCCCAGCAAGCCTGTTCACCTGACTGCTTTCCTTGGCTACAAGGCTGGCATGACCCACATAGTCCGTGAGGTCGACAGACCTGGCTCAAaGGTCAACAAAAAGGAGGTGGTGGAGGCAGTGACCGTTGTGGAGACTCCTCCCATGATTGTGGTGGGTGTTGTTGGATACGTCATGACCCCTCGTGGTCTGCGCTCATTCAAGACCATCTTTGCTGAGCACATCAGTGATGAGTGCAAGCGTCGCTTCTACAAGAACTGGTATAAGTCCAAGAAGAAGGCCTTTACCAAGTACTGCAAGAGGTGGCAAGATGAAGAGGGCAAGAAGCAGCTGGAGAAAGACTTTTCCTCCATGAAGAAGTACTGCCAGATCATTCGCATCATTGCCCACACTCAGATGCGCCTGCTGCCCCACAGACAGAAGAAGTCTCACTTGATGGAGATCCAGCTGAACGGAGGCACCATCTCCGATAAGGTTGACTGGGCCAGAGAGAAGCTTGAGCAGTCCATTCCCATCGCTAATGTCTTCTCTCAGGATGAGATGATTGACGTTATTGGTGTTACCAAGGGACATGGATGCAAGGGTGTGACTAGCCGTTGGCACACAAAGAAGCTGCCCCGCAAGACCCATCGTGGTCTGCGTAAGGTGGCTTGTATTGGAGCCTGGCATCCTGCCCGTGTGGCTTTCTCTGTGGCTCGTGCTGGACAGAAGGGCTACCACCACCGCACAGAAATCAACAAAAAGATCTACAAGATTGGTGTGGGCTATCATAACAAGGACGGAAAACTTGTCAAGAACAACGCCTCTACTGATTATGATCTGTCCAACAAGAGCATCAACCCTCTGGGTGGCTTTGTGCATTATGGTGAGGTGACGAATGACTTCCTCATGCTGAAAGGCTGTGTGGTCGGAACCAAGAAGAGGGTTTTGACTCTGCGCAAATCTCTACTGGTCCAGACCAGCCGTCGTGCTCAGGAGAAGATCGACCTGAAGTTCATCGACACCACCTCCAAGTTTGGTCATGGACGTTTCCAGACCATCGAAGAGAAGAAGAACTTCATGGGACCCCTCAAGAAAGACCGCCTGGCCAAGGAAGAGATGGCCTAATTGTGTTCTGCTCCTGTTTTGCCTGGTTTCATGCAGTACTGCggagtttaataaaaacaaaccaagttcatga
>TCONS_00051478
ATGTCTCACCGTAAATTTTCGGCCCCACGCCACGGCTCTCTGGGTTTCCTGCCCCGCAAGAGGTGCAAACGCCATCGTGGCAAGGTGAAGAGTTTCCCCAAAGATGATCCCAGCAAGCCTGTTCACCTGACTGCTTTCCTTGGCTACAAGGCTGGCATGACCCACATAGTCCGTGAGGTCGACAGACCTGGCTCAAaGGTCAACAAAAAGGAGGTGGTGGAGGCAGTGACCGTTGTGGAGACTCCTCCCATGATTGTGGTGGGTGTTGTTGGATACGTCATGACCCCTCGTGGTCTGCGCTCATTCAAGACCATCTTTGCTGAGCACATCAGTGATGAGTGCAAGCGTCGCTTCTACAAGAACTGGTATAAGTCCAAGAAGAAGGCCTTTACCAAGTACTGCAAGAGGTGGCAAGATGAAGAGGGCAAGAAGCAGCTGGAGAAAGACTTTTCCTCCATGAAGAAGTACTGCCAGATCATTCGCATCATTGCCCACACTCAGATGCGCCTGCTGCCCCACAGACAGAAGAAGTCTCACTTGATGGAGATCCAGCTGAACGGAGGCACCATCTCCGATAAGGTTGACTGGGCCAGAGAGAAGCTTGAGCAGTCCATTCCCATCGCTAATGTCTTCTCTCAGGATGAGATGATTGACGTTATTGGTGTTACCAAGGGACATGGATGCAAGGGTGTGACTAGCCGTTGGCACACAAAGAAGCTGCCCCGCAAGACCCATCGTGGTCTGCGTAAGGTGGCTTGTATTGGAGCCTGGCATCCTGCCCGTGTGGCTTTCTCTGTGGCTCGTGCTGGACAGAAGGGCTACCACCACCGCACAGAAATCAACAAAAAGATCTACAAGATTGGTGTGGGCTATCATAACAAGGACGGAAAACTTGTCAAGAACAACGCCTCTACTGATTATGATCTGTCCAACAAGAGCATCAACCCTCTGGGTGGCTTTGTGCATTATGGTGAGGTGACGAATGACTTCCTCATGCTGAAAGGCTGTGTGGTCGGAACCAAGAAGAGGGTTTTGACTCTGCGCAAATCTCTACTGGTCCAGACCAGCCGTCGTGCTCAGGAGAAGATCGACCTGAAGTTCATCGACACCACCTCCAAGTTTGGTCATGGACGTTTCCAGACCATCGAAGAGAAGAAGAACTTCATGGGACCCCTCAAGAAAGACCGCCTGGCCAAGGAAGAGATGGCCTAA
>TCONS_00051480
GACTTTTCCTCCATGAAGAAGTACTGCCAGATCATTCGCATCATTGCCCACACTCAGATGCGCCTGCTGCCCCACAGACAGAAGAAGTCTCACTTGATGGAGATCCAGCTGAACGGAGGCACCATCTCCGATAAGGTTGACTGGGCCAGAGAGAAGCTTGAGCAGTCCATTCCCATCGCTAATGTCTTCTCTCAGGATGAGATGATTGACGTTATTGGTGTTACCAAGGGACATGGATGCAAGGGTGTGACTAGCCGTTGGCACACAAAGAAGCTGCCCCGCAAGACCCATCGTGGTCTGCGTAAGGTGGCTTGTATTGGAGCCTGGCATCCTGCCCGTGTGGCTTTCTCTGTGGCTCGTGCTGGACAGAAGGGCTACCACCACCGCACAGAAATCAACAAAAAGATCTACAAGATTGGTGTGGGCTATCATAACAAGGACGGAAAACTTGTCAAGAACAACGCCTCTACTGATTATGATCTGTCCAACAAGAGCATCAACCCTCTGGTGAGTGTGCTGTTGTCTCCCTATTGTGAATTTGATAAATTGTTTATATGCATGCATTAATACTGATGCCTTTTTATTTTAGGGTGGCTTTGTGCATTATGGTGAGGTGACGAATGACTTCCTCATGCTGAAAGGCTGTGTGGTCGGAACCAAGAAGAGGGTTTTGACTCTGCGCAAATCTCTACTGGTCCAGACCAGCCGTCGTGCTCAGGAGAAGATCGACCTGAAGTT
>TCONS_00051482
TCTCACCGTAAATTTTCGGCCCCACGCCACGGCTCTCTGGGTTTCCTGCCCCGCAAGAGGTGCAAACGCCATCGTGGCAAGGTGAAGAGTTTCCCCAAAGATGATCCCAGCAAGCCTGTTCACCTGACTGCTTTCCTTGGCTACAAGGCTGGCATGACCCACATAGTCCGTGAGGTCGACAGACCTGGCTCAAaGGTCAACAAAAAGGAGGTGGTGGAGGCAGTGACCGTTGTGGAGACTCCTCCCATGATTGTGGTGGGTGTTGTTGGATACGTCATGACCCCTCGTGGTCTGCGCTCATTCAAGACCATCTTTGCTGAGCACATCAGTGATGAGTGCAAGCGTCGCTTCTACAAGAACTGCTCCGCTCAGGTGCCTCGTGCCCTGATGAGCTCCGGGCTCCGCTGGCCGGTGGAAAGGGCTCCTTAGAAACCGTGCCATGAGCCAAAATGACCTAGTGCTGTCGATGCCTCCCCTTTTTTTATGAGGATGGGCAAGCAGCCGTGCCCAGTCTCCTTCCACTGGCCCACTGGGCTATGAAGGAACTGCGTGCCAACCTCTTGTTCTCCCCTGCCCTCATCTACCACCTTCAGGTATAAGTCCAAGAAGAAGGCCTTTACCAAGTACTGCAAGAGGTGGCAAGATGAAGAGGGCAAGAAGCAGCTGGAGAAAGACTTTTCCTCCATGAAGAAGTACTGCCAGATCATTCGCATCATTGCCCACACTCAGATGCGCCTGCTGCCCCACAGACAGAAGAAGTCTCACTTGATGGAGATCCAGCTGAACGGAGGCACCATCTCC

Function

symbol description
rpl3 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within exocrine pancreas development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in eye; liver; and pancreas. Used to study Shwachman-Diamond syndrome. Orthologous to human RPL3 (ribosomal protein L3).

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0006412 translation biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-1291 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within exocrine pancreas development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in eye; liver; and pancreas. Used to study Shwachman-Diamond syndrome. Orthologous to human RPL3 (ribosomal protein L3).

Ensembl:

ensembl_id ENSDARG00000003599

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051477 False 1382 mRNA 0.51 9 29867213 29871364
TCONS_00051478 False 1212 mRNA 0.52 9 29867286 29870848
TCONS_00051480 False 738 mRNA 0.49 4 29867982 29869120
TCONS_00051482 True 801 processed_transcript 0.55 4 29868899 29870124

Neighbor

gene id symbol gene type direction distance location
XLOC_026415 NA coding downstream 3607 29835165 ~ 29863606 (-)
XLOC_026414 BX901883.6 coding downstream 96955 29770142 ~ 29770258 (-)
XLOC_026413 BX901883.4 coding downstream 150068 29713211 ~ 29717145 (-)
XLOC_026412 si:ch73-233k15.2 coding downstream 178814 29674308 ~ 29688399 (-)
XLOC_026411 BX571960.2 coding downstream 195560 29654961 ~ 29671653 (-)
XLOC_026419 slc25a39 coding upstream 1455 29872819 ~ 29891500 (-)
XLOC_026420 rpl27 coding upstream 22602 29893966 ~ 29899230 (-)
XLOC_026421 RUNDC1 coding upstream 30857 29902221 ~ 29910547 (-)
XLOC_026422 grna coding upstream 43063 29914427 ~ 29941357 (-)
XLOC_026423 bcat2 coding upstream 78620 29949984 ~ 29968055 (-)
XLOC_026410 NA non-coding downstream 241278 29623117 ~ 29625935 (-)
XLOC_026425 NA non-coding upstream 123531 29994895 ~ 30004929 (-)
XLOC_026426 NA non-coding upstream 148472 30019836 ~ 30023485 (-)
XLOC_026427 NA non-coding upstream 165333 30036697 ~ 30039149 (-)
XLOC_026432 NA non-coding upstream 327672 30199036 ~ 30201831 (-)
XLOC_026439 NA non-coding upstream 823513 30694877 ~ 30696290 (-)

Expression


Co-expression Network