XLOC_026423 (bcat2)


Basic Information

Item Value
gene id XLOC_026423
gene name bcat2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29949984 ~ 29968055 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051497
CAACTAAAGGGGCATGTAGGTGTTCAAAACCCAGCAGAATGGCGCTGTTTCCGCAGGTCTCCAATCCGGAACGCAGAGCCCGGCCTGTCTGTCCTGAGCTGTTGCTCCCACTCGGACGAGTTTACCATTCATCTCACAGCAgtagcaacagcagcagcagcgatGGCAGCGCTCAGGACGGCAGTGAACGGACGCTTTCTTCACCCTCTCTCCTTGTCATGTGGGTCGTTGCGCTTCGTCAGCTCCTCCTTCAAGCAATTTAATTGAATTCAATTTCCATAAGAGCTTGAGCATGATGAATCcagattattttttttcatatgcatgTGCAATCAGTGACAATGAATAAACAGCTCTCCACGTGCCCCGCTGTACTCCCCACCCCTCTCTGTCTTTTCGTTTTCTCTCCCTTTttttgtctctttctctctctctgtcttcccAATTGTTTATGTCAGGCTGCAGATCTGACCATCGAGAAGAGCTCGGTGCTGAAGCCAAAGCCAGATCCGTCAACGCTCGTGTTTGGCAAGCAGTTTTCAGACCACATGCTGACCATCAGCTGGTCTGCAGCAGGAGGATGGGAGAACCCTCAGATCAAGCCCTTCCAGAATCTGTCCCTTCACCCAGCATGCTCAGCCCTACATTACTCAATAGAGctctttgAGGGTATGAAGGCCTTTCGGGGAGTGGACAACAACATCCGCCTCTTCAGGCCTATGCTGAATATGGAGCGCATGCATCGGAGTGCTGAAAGGAGTTGTCTGCCTTTGTTTGATAAGGCTGAACTGCTGAAATGCATCAATAAGCTGGTTGAGACTGACCAAGAATGGGTTCCTTACTCCACAGATGCCAGCCTGTACATCAGACCAACATTCATAGGAACCGAACCTTCACTAGGTGTTTCTCGAGCTGGTCACGCGTTGCTGTTTGTCATCGTTGGACCCGTTGGACCTTATTTTGCCACTGGAAGTTTTAATCCGGTGTCCTTGCTGGCAGATCCTCGATACGTCCGGGCCTGGAGGGGTGGCGTCGGAGAGTACAAAATGGGCGGCAACTATGGGCCGACCATCGCTGTCCAGAATGAGGCGGCAAAGCAAGGCTGTCAGCAGGTCCTCTGGCTGTATGGAGAGAGTGAGGAGATCACTGAGGTCGGCACCATGAATCTCTTCATCTACTGGACCACAAAGAAAGGAGAAAAAGAGCTGGTCACTCCTCCACTTGATGGCGTCATTCTTCCAGGAGTCACCAGACAGTCTCTGCTGGACCTCGCCAGAGAATGGGGGGAATTCAAAGTGACTGAGCGGAGAGTTTTCATGAAGGAGCTGTTGGGGGCTTTAGATGAGGGTCGGGTGCTGGAGGTCTTCGGTTCGGGCACTGCATGTGTGGTGTGTCCCGTTGGCAGTCTGCTCTACAAAGGACAAactTACCAAATTCCTACAATGAAGAATGGGCCAGACCTTGCCAAGCGATTCCACAAGGAGCTCACTGACATCCAGTATGGACGTCTTCAGAGGGACTGGGCTCCACTGGTCGTCTAACCGATTGGATGCAGGTTTCACATCTCAAACCTCTCTCATCTCACCGGTTTGTGTGTGTGGACTTCACAGACAGGACTGTTATTCTACAATAACAAAAACCTTTCGAAATAGAAAACCACCTATTAAATATATGCAGTCTGTCCAAACCAGCTTACATCCTGCTTGCTATAGAGGTCTTTATTGCACAATTTGTAGCACTAGAATTCGTCCTTAAACCTGTCGAGCACAAGCGTCATAAGCCATATATAAGCAAAGGCACAAGCAAATGTGTTCTCCTCGCAGTAGTTACTGATCCAGtgtggaaacttttgtttttttaaagtctgtCATGCTTTGTTGTTTCCTTATTATCTAAAATGCTTCAGTCTTTTGTTTCTAAagctaattatatttttatattaaagtaaTGATTTTAAAGGAACTCATTTTACGACTCCCTTACAGTTAAACAGATTTAACATTTTTTGTATCCAGTCAGCAGATCTGGcagtagcacttttagcttagcttaccctgctgaaaaaaaaactgctggttttagctgtttaatcagcctggtttaagaggggtttggccatttccaggctggtttccagccatttccagcctggtcttggcTGATCAGACTGGAAAATGATCAGCTAAAacaagcttgaccagcctggtcaCTCTTGTTTTAGCTCGTCATCTGCCCACTATAACCCCTCTCAAACCAGGCTaatcgaccagctaaaaccagccaaccagcctgggctgttttaagctgtttttttttttcagcaggatagccaAGTCAGGTCAttgaatgagagtatagttcctagttaAATCGATCTAGAAAGTACCAACATCGGCTTTAGTACACAATTTACCAACAGAACAATcaagaaaaattattaaaactggtcatttttgagcgaggtgctaatggtctaatttatTTTGTTGGTCTATGCTAAGCTAGGCTAATAGTGCTCCCATCAGACccaaagatcagctgaatggatttaaaaatggtaaaacacaaCTGTTTGACACTACTTGAGCTTTCTTGAGCAAATTTGCATTTTGCGagaaagtggagtgttcctttaagaaatCAGGCAGTTGAGGATTAGACTTCAGCACGCTGCCATTTTAATGCAGACATTGCATTGCATCTTGTCCGTTTGTGTAGAATAAAAGAATCTAGTGTCATACTTTTTCTGTATCAGGAGAGCTAAGTATTCAGTTAGCATTCATTCAAACTGTGCTGTTTCTTGATAAAAAcacactaaaatgttattttaaaaaaaatatatcataaaCAATTATGCTACTTCAAGGGCAATGTATTACCGCCAGATTTAGATGATTTAAAACCATGAGCTGAACTTATGCACGCACAAGGGCATCATGACGGCCCAGACATAGCAGCTCTAGAGACCACTAGAAATTGATGTGATAATCGTCACTAGGCTGTGTGTGTTAAAGATGTAATATCTGGAACAACAATGTGAactgtatatacatgtgtgtgaagTATGTGATGTTCGCTGGACATGTAGAATGTAGCCTATTGGTTTTAACTTATTTCCGGTGTCGTTTTAGTAACGTCAGTTACATGGCTTTAATGCATATCGCTGTTGTTTTTCTTCATGAACTGTCATGTTGTTTTCCCCCTCATTTTAAACGAGTGTTTTAATGCTTGCACTCTACTCCACGGCTCTTTTCTTTAGTTTAAGTGCCTGACGGAGTTCGTTTCTCTTTGCCATCTCTCTCATCTTTTTGTCTGTATTGAGCTGAAGGGGGCGCTGCTGCACTCaagtttggtttgttttgttttctgatgGTTTTCAAAGATGTCTTTACTTTTTCctgttactgtatttttacaaataaactctATTTACTTCCAAATATGTAA
>TCONS_00051498
ACTGCTCGTGTTGCAAATAATGCGAACGAGTCACAAATAACAACTAAAGGGGCATGTAGGTGTTCAAAACCCAGCAGAATGGCGCTGTTTCCGCAGGTCTCCAATCCGGAACGCAGAGCCCGGCCTGTCTGTCCTGAGCTGTTGCTCCCACTCGGACGAGTTTACCATTCATCTCACAGCAgtagcaacagcagcagcagcgatGGCAGCGCTCAGGACGGCAGTGAACGGACGCTTTCTTCACCCTCTCTCCTTGTCATGTGGGTCGTTGCGCTTCGTCAGCTCCTCCTTCAAGGCTGCAGATCTGACCATCGAGAAGAGCTCGGTGCTGAAGCCAAAGCCAGATCCGTCAACGCTCGTGTTTGGCAAGCAGTTTTCAGACCACATGCTGACCATCAGCTGGTCTGCAGCAGGAGGATGGGAGAACCCTCAGATCAAGCCCTTCCAGAATCTGTCCCTTCACCCAGCATGCTCAGCCCTACATTACTCAATAGAGctctttgAGGGTATGAAGGCCTTTCGGGGAGTGGACAACAACATCCGCCTCTTCAGGCCTATGCTGAATATGGAGCGCATGCATCGGAGTGCTGAAAGGAGTTGTCTGCCTTTGTTTGATAAGGCTGAACTGCTGAAATGCATCAATAAGCTGGTTGAGACTGACCAAGAATGGGTTCCTTACTCCACAGATGCCAGCCTGTACATCAGACCAACATTCATAGGAACCGAACCTTCACTAGGTGTTTCTCGAGCTGGTCACGCGTTGCTGTTTGTCATCGTTGGACCCGTTGGACCTTATTTTGCCACTGGAAGTTTTAATCCGGTGTCCTTGCTGGCAGATCCTCGATACGTCCGGGCCTGGAGGGGTGGCGTCGGAGAGTACAAAATGGGCGGCAACTATGGGCCGACCATCGCTGTCCAGAATGAGGCGGCAAAGCAAGGCTGTCAGCAGGTCCTCTGGCTGTATGGAGAGAGTGAGGAGATCACTGAGGTCGGCACCATGAATCTCTTCATCTACTGGACCACAAAGAAAGGAGAAAAAGAGCTGGTCACTCCTCCACTTGATGGCGTCATTCTTCCAGGAGTCACCAGACAGTCTCTGCTGGACCTCGCCAGAGAATGGGGGGAATTCAAAGTGACTGAGCGGAGAGTTTTCATGAAGGAGCTGTTGGGGGCTTTAGATGAGGGTCGGGTGCTGGAGGTCTTCGGTTCGGGCACTGCATGTGTGGTGTGTCCCGTTGGCAGTCTGCTCTACAAAGGACAAactTACCAAATTCCTACAATGAAGAATGGGCCAGACCTTGCCAAGCGATTCCACAAGGAGCTCACTGACATCCAGTATGGACGTCTTCAGAGGGACTGGGCTCCACTGGTCGTCTAACCGATTGGATGCAGGTTTCACATCTCAAACCTCTCTCATCTCACCGGTTTGTGTGTGTGGACTTCACAGACAGGACTGTTATTCTACAATAACAAAAACCTTTCGAAATAGAAAACCACCTATTAAATATATGCAGTCTGTCCAAACCAGCTTACATCCTGCTTGCTATAGAGGTCTTTATTGCACAATTTGTAGCACTAGAATTCGTCCTTAAACCTGTCGAGCACAAGCGTCATAAGCCATATATAAGCAAAGGCACAAGCAAATGTGTTCTCCTCGCAGTAGTTACTGATCCAGtgtggaaacttttgtttttttaaagtctgtCATGCTTTGTTGTTTCCTTATTATCTAAAATGCTTCAGTCTTTTGTTTCTAAagctaattatatttttatattaaagtaaTGATTTTAAAGGAACTCATTTTACGACTCCCTTACAGTTAAACAGATTTAACATTTTTTGTATCCAGTCAGCAGATCTGGcagtagcacttttagcttagcttaccctgctgaaaaaaaaactgctggttttagctgtttaatcagcctggtttaagaggggtttggccatttccaggctggtttccagccatttccagcctggtcttggcTGATCAGACTGGAAAATGATCAGCTAAAacaagcttgaccagcctggtcaCTCTTGTTTTAGCTCGTCATCTGCCCACTATAACCCCTCTCAAACCAGGCTaatcgaccagctaaaaccagccaaccagcctgggctgttttaagctgtttttttttttcagcaggatagccaAGTCAGGTCAttgaatgagagtatagttcctagttaAATCGATCTAGAAAGTACCAACATCGGCTTTAGTACACAATTTACCAACAGAACAATcaagaaaaattattaaaactggtcatttttgagcgaggtgctaatggtctaatttatTTTGTTGGTCTATGCTAAGCTAGGCTAATAGTGCTCCCATCAGACccaaagatcagctgaatggatttaaaaatggtaaaacacaaCTGTTTGACACTACTTGAGCTTTCTTGAGCAAATTTGCATTTTGCGagaaagtggagtgttcctttaagaaatCAGGCAGTTGAGGATTAGACTTCAGCACGCTGCCATTTTAATGCAGACATTGCATTGCATCTTGTCCGTTTGTGTAGAATAAAAGAATCTAGTGTCATACTTTTTCTGTATCAGGAGAGCTAAGTATTCAGTTAGCATTCATTCAAACTGTGCTGTTTCTTGATAAAAAcacactaaaatgttattttaaaaaaaatatatcataaaCAATTATGCTACTTCAAGGGCAATGTATTACCGCCAGATTTAGATGATTTAAAACCATGAGCTGAACTTATGCACGCACAAGGGCATCATGACGGCCCAGACATAGCAGCTCTAGAGACCACTAGAAATTGATGTGATAATCGTCACTAGGCTGTGTGTGTTAAAGATGTAATATCTGGAACAACAATGTGAactgtatatacatgtgtgtgaagTATGTGATGTTCGCTGGACATGTAGAATGTAGCCTATTGGTTTTAACTTATTTCCGGTGTCGTTTTAGTAACGTCAGTTACATGGCTTTAATGCATATCGCTGTTGTTTTTCTTCATGAACTGTCATGTTGTTTTCCCCCTCATTTTAAACGAGTGTTTTAATGCTTGCACTCTACTCCACGGCTCTTTTCTTTAGTTTAAGTGCCTGACGGAGTTCGTTTCTCTTTGCCATCTCTCTCATCTTTTTGTCTGTATTGAGCTGAAGGGGGCGCTGCTGCACTCaagtttggtttgttttgttttctgatgGTTTTCAAAGATGTCTTTACTTTTTCctgttactgtatttttacaaataaactctATTTACTTCCAAATATG
>TCONS_00051499
CGGACGCTTTCTTCACCCTCTCTCCTTGTCATGTGGGTCGTTGCGCTTCGTCAGCTCCTCCTTCAAGCAATTTAATTGAATTCAATTTCCATAAGAGCTTGAGCATGATGAATCcagattattttttttcatatgcatgTGCAATCAGTGACAATGAATAAACAGCTCTCCACGTGCCCCGCTGTACTCCCCACCCCTCTCTGTCTTTTCGTTTTCTCTCCCTTTttttgtctctttctctctctctgtcttcccAATTGTTTATGTCAGGCTGCAGATCTGACCATCGAGAAGAGCTCGGTGCTGAAGCCAAAGCCAGATCCGTCAACGCTCGTGTTTGGCAAGCAGTTTTCAGACCACATGCTGACCATCAGCTGGTCTGCAGCAGGAGGATGGGAGAACCCTCAGATCAAGCCCTTCCAGAATCTGTCCCTTCACCCAGCATGCTCAGCCCTACATTACTCAATAGAGctctttgAGGGTATGAAGGCCTTTCGGGGAGTGGACAACAACATCCGCCTCTTCAGGCCTATGCTGAATATGGAGCGCATGCATCGGAGTGCTGAAAGGAGTTGTCTGCCTTTGTTTGATAAGGCTGAACTGCTGAAATGCATCAATAAGCTGGTTGAGACTGACCAAGAATGGGTTCCTTACTCCACAGATGCCAGCCTGTACATCAGACCAACATTCATAGGAACCGAACCTTCACTAGGTGTTTCTCGAGCTGGTCACGCGTTGCTGTTTGTCATCGTTGGACCCGTTGGACCTTATTTTGCCACTGGAAGTTTTAATCCGGTGTCCTTGCTGGCAGATCCTCGATACGTCCGGGCCTGGAGGGGTGGCGTCGGAGAGTACAAAATGGGCGGCAACTATGGGCCGACCATCGCTGTCCAGAATGAGGCGGCAAAGCAAGGCTGTCAGCAGGTCCTCTGGCTGTATGGAGAGAGTGAGGAGATCACTGAGGTCGGCACCATGAATCTCTTCATCTACTGGACCACAAAGAAAGGAGAAAAAGAGCTGGTCACTCCTCCACTTGATGGCGTCATTCTTCCAGGAGTCACCAGACAGTCTCTGCTGGACCTCGCCAGAGAATGGGGGGAATTCAAAGTGACTGAGCGGAGAGTTTTCATGAAGGAGCTGTTGGGGGCTTTAGATGAGGGTCGGGTGCTGGAGGTCTTCGGTTCGGGCACTGCATGTGTGGTGTGTCCCGTTGGCAGTCTGCTCTACAAAGGACAAactTACCAAATTCCTACAATGAAGAATGGGCCAGACCTTGCCAAGCGATTCCACAAGGAGCTCACTGACATCCAGTATGGACGTCTTCAGAGGGACTGGGCTCCACTGGTCGTCTAACCGATTGGATGCAGGTTTCACATCTCAAACCTCTCTCATCTCACCGGTTTGTGTGTGTGGACTTCACAGACAGGACTGTTATTCTACAATAACAAAAACCTTTCGAAATAGAAAACCACCTATTAAATATATGCAGTCTGTCCAAACCAGCTTACATCCTGCTTGCTATAGAGGTCTTTATTGCACAATTTGTAGCACTAGAATTCGTCCTTAAACCTGTCGAGCACAAGCGTCATAAGCCATATATAAGCAAAGGCACAAGCAAATGTGTTCTCCTCGCAGTAGTTACTGATCCAGtgtggaaacttttgtttttttaaagtctgtCATGCTTTGTTGTTTCCTTATTATCTAAAATGCTTCAGTCTTTTGTTTCTAAagctaattatatttttatattaaagtaaTGATTTTAAAGGAACTCATTTTACGACTCCCTTACAGTTAAACAGATTTAACATTTTTTGTATCCAGTCAGCAGATCTGGcagtagcacttttagcttagcttaccctgctgaaaaaaaaactgctggttttagctgtttaatcagcctggtttaagaggggtttggccatttccaggctggtttccagccatttccagcctggtcttggcTGATCAGACTGGAAAATGATCAGCTAAAacaagcttgaccagcctggtcaCTCTTGTTTTAGCTCGTCATCTGCCCACTATAACCCCTCTCAAACCAGGCTaatcgaccagctaaaaccagccaaccagcctgggctgttttaagctgtttttttttttcagcaggatagccaAGTCAGGTCAttgaatgagagtatagttcctagttaAATCGATCTAGAAAGTACCAACATCGGCTTTAGTACACAATTTACCAACAGAACAATcaagaaaaattattaaaactggtcatttttgagcgaggtgctaatggtctaatttatTTTGTTGGTCTATGCTAAGCTAGGCTAATAGTGCTCCCATCAGACccaaagatcagctgaatggatttaaaaatggtaaaacacaaCTGTTTGACACTACTTGAGCTTTCTTGAGCAAATTTGCATTTTGCGagaaagtggagtgttcctttaagaaatCAGGCAGTTGAGGATTAGACTTCAGCACGCTGCCATTTTAATGCAGACATTGCATTGCATCTTGTCCGTTTGTGTAGAATAAAAGAATCTAGTGTCATACTTTTTCTGTATCAGGAGAGCTAAGTATTCAGTTAGCATTCATTCAAACTGTGCTGTTTCTTGATAAAAAcacactaaaatgttattttaaaaaaaatatatcataaaCAATTATGCTACTTCAAGGGCAATGTATTACCGCCAGATTTAGATGATTTAAAACCATGAGCTGAACTTATGCACGCACAAGGGCATCATGACGGCCCAGACATAGCAGCTCTAGAGACCACTAGAAATTGATGTGATAATCGTCACTAGGCTGTGTGTGTTAAAGATGTAATATCTGGAACAACAATGTGAactgtatatacatgtgtgtgaagTATGTGATGTTCGCTGGACATGTAGAATGTAGCCTATTGGTTTTAACTTATTTCCGGTGTCGTTTTAGTAACGTCAGTTACATGGCTTTAATGCATATCGCTGTTGTTTTTCTTCATGAACTGTCATGTTGTTTTCCCCCTCATTTTAAACGAGTGTTTTAATGCTTGCACTCTACTCCACGGCTCTTTTCTTTAGTTTAAGTGCCTGACGGAGTTCGTTTCTCTTTGCCATCTCTCTCATCTTTTTGTCTGTATTGAGCTGAAGGGGGCGCTGCTGCACTCaagtttggtttgttttgttttctgatgGTTTTCAAAGATGTCTTTACTTTTTCctgttactgtatttttacaaataaactctATTTACTTCCAAA

Function

symbol description
bcat2 Predicted to enable branched-chain-amino-acid transaminase activity. Predicted to be involved in leucine biosynthetic process and valine biosynthetic process. Predicted to act upstream of or within branched-chain amino acid biosynthetic process and cellular amino acid biosynthetic process. Predicted to be active in mitochondrion. Orthologous to human BCAT2 (branched chain amino acid transaminase 2).

GO:

id name namespace
GO:0009081 branched-chain amino acid metabolic process biological_process
GO:0009082 branched-chain amino acid biosynthetic process biological_process
GO:0009098 leucine biosynthetic process biological_process
GO:0009099 valine biosynthetic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0052654 L-leucine transaminase activity molecular_function
GO:0052655 L-valine transaminase activity molecular_function
GO:0052656 L-isoleucine transaminase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008483 transaminase activity molecular_function
GO:0004084 branched-chain-amino-acid transaminase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-425 Predicted to enable branched-chain-amino-acid transaminase activity. Predicted to be involved in leucine biosynthetic process and valine biosynthetic process. Predicted to act upstream of or within branched-chain amino acid biosynthetic process and cellular amino acid biosynthetic process. Predicted to be active in mitochondrion. Orthologous to human BCAT2 (branched chain amino acid transaminase 2).

Ensembl:

ensembl_id ENSDARG00000054849

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051497 False 3447 mRNA 0.44 11 29949984 29968015
TCONS_00051498 False 3281 mRNA 0.44 11 29949987 29968055
TCONS_00051499 True 3252 mRNA 0.43 10 29949991 29962345

Neighbor

gene id symbol gene type direction distance location
XLOC_026422 grna coding downstream 8627 29914427 ~ 29941357 (-)
XLOC_026421 RUNDC1 coding downstream 39437 29902221 ~ 29910547 (-)
XLOC_026420 rpl27 coding downstream 50754 29893966 ~ 29899230 (-)
XLOC_026419 slc25a39 coding downstream 58484 29872819 ~ 29891500 (-)
XLOC_026418 NA coding downstream 81252 29868635 ~ 29868732 (-)
XLOC_026424 hsd17b14 coding upstream 1088 29969143 ~ 29977495 (-)
XLOC_026425 NA coding upstream 26840 29994895 ~ 30004929 (-)
XLOC_026426 NA coding upstream 51781 30019836 ~ 30023485 (-)
XLOC_026427 NA coding upstream 68642 30036697 ~ 30039149 (-)
XLOC_026428 ppfia3 coding upstream 75956 30044011 ~ 30123113 (-)
XLOC_026417 BX901883.1 non-coding downstream 82444 29867404 ~ 29867540 (-)
XLOC_026415 NA non-coding downstream 86378 29835165 ~ 29863606 (-)
XLOC_026414 BX901883.6 non-coding downstream 179726 29770142 ~ 29770258 (-)
XLOC_026413 BX901883.4 non-coding downstream 232839 29713211 ~ 29717145 (-)
XLOC_026432 NA non-coding upstream 230981 30199036 ~ 30201831 (-)
XLOC_026439 NA non-coding upstream 726822 30694877 ~ 30696290 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_02234713_02242090 NA coding CI01000069 null 2233432 ~ 2242090 (-)