XLOC_026432


Basic Information

Item Value
gene id XLOC_026432
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30199036 ~ 30201831 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053049
tattatggtggatgaggagattcccccaaatgtgtaaagcgccttgagtgtctagaaaagcactgtataaatgtaaggaaatattattgttgttcaaattattgaataattattattagaacAAAGTACACAAATTGTATTTTTCTACAAACAAATCTGCTAAAGTTTATATAACTATTCATTTATCAAATAGGCCTACTATTTGAAAAATATAagtgttgttgcttttttaacaAGCAGTGAAGGGTTTGACTGAATCCCTTCGTGTGGTCTCATCAGCCTAAAGAGAAAAAGAATAAATTCAAATCAATCACTTTGTCCCTGGTTTATATGTCTCTTTGGATAGTgtcaactaaataaaatattaggGATAGTATGAACTCACGCTACACGccaaaaatacataaaagttCAACAGCGCTCTCTGCTGGTCACAGTGTGCACTTTCCTCAGAGTTGTTTTGTTTAGCCTACTCGCGCCATAGACATATTTACTAGATATCGCAAACAGACCCTGAGAATGCGTCAATACCgacgccacatttgtacagtgctcccagaacaaaagtcattcaaccgAACTAGTCAAGACTAGACTTTTGTGTTATGTatgggtgtagtaatgagcaaacaaagaaagcaTAAAGGCATCACaattcataggtaagatttcattttttacatttttgtatgttacaaacttttgtgcttaacaagTAGCATTATTGATggtaatacagtcacttactgcactgatCATAAGGCAAAGTAGTACCAACTCACACCaaatactaggcttatgctagttttttttaataaataagcaaacaatgtattCAAACTtatattattgtcagctaagtaACGTTAATGgctagtttttgaagtaacttataagGGTGCCTGCGCCTTAATCTCCATCTTAATTaattgaatattacaaatgttatatacCATGTACATCAGAATGGTGAATATGCACACTGAGACGCAGGGACGCACTTGAaaaatgatgtaaaattataatttatagtaATAGTAACCACCGGGAAAACTTCAGATCATAGATATACGTCTATATATCTCTGGCtccggatggccagtcctccattGCAACTTGGGCTCACATTCATTTCAAGGGAGCGCttccctgtactaaaatggtggctctactgactcattccttccaatagacaacaacagcatAGGCAACATTTAATGGAAATATCCAAAACAAAAACTCCAGACTAAAGTCAAGAAAGACGAGGAGCAGAATTCAACAACAAACAACATGTTTATTCAAAACGCATTTACTTCAACATCGAACAGTCGTGAAATAATTAAGATAAACACATAGCTGGTTGACATCTGTAGTGTTGAAAACCCTCAAACCTGACATATCCTTCAATCTAGCGAAAACTTTTTCAGAGAAGTCATCGAACTAATCAACAATTCGCACGTCGGCATTTATATCCGTTATCAGCACATTAAATCACTAAGAATgcagaaaaatgtaatttgcaGGTGAATAATTTATAACATTGGTGTTTTAAAAGCTTATTGTCCTGCTTATTGTAGAAATTCTTTGAAACTCTTTCTGAAATGAACGATATTTCACGCAGCCAAAGAGTGACATCATTTGTAAGCATTCACAGTAAAAACTACTGAATCCACATCTGAACTCAGCAGTCTATACATACAAGTACATGTAGTGTCTGTTAACGGAAAACGCTTCTCTGATGACGGATGTGGTGTATATCAGCTCAATTACCTTCAGTAAATCTATCAGTTACTGCGTATGATTAGTAATGAAATGATGTTTGTTAGTGTTTCTCAGTGAAATGCACTACGTAACTAAGGTCTGCCACAACCAGAAGAAATTGTCCCGATTAAGACATGCTGATCAAACCTctactcctcttcctcctcctgctGCTGCAGATGTGAAGGTTTGGTAAAAGGTTTAGCCACTTGAAACGCCATAGAAATACTATTAATGATATGCAGGAGAAGCTTCAGatatgcacacaatcaCCCTCTCAGTGTTTGAGAGAGAAGTCGCCCGTGTTTAGACGAGGCCGAGGCAGTGCTCCGAACATCTCCGTCCCATCGGTGGCTCCTGGGACCAGTAAGGCTTTCATACTCGCAGCTATGTGGTCCAAGTCTGCACAGCCCACCTGAAATCAACAAAAGGTATTAAATAAGACACTTAGACATGACTATCAGACAAAAAAACTATGAGACCtctaaaagacatctaatagacatccagaCATTTGCCTTTTGGGTAAATTTGGTTGGAATCTAATATACATCTAAATATATTCCAAGAATGGATGGAAAGGACATGTAACTAACCCGTTCTCCACTGTGCGAGTCTCCCTGAGGGGCATGATTGTTCCTGTAGCCCCACACCGGAACTGACACAGGCAATGAACGAGCCATTGACATGGGGTTGGAGGAGCGGGACGCCAAGTGACCCATTGCCATACCACGAGGAGGCGGCGGTGCTTCCTCACTCAGAGAACCTGACGGcaataaaacagatataaataaatggatgacagcaataaaacacatttatgcTCAGATAATCATCTCTATAAACAGCACTTAGTACAGTACATGGCGAGTCACGGTGTTATTTCCTCATACAGCACTTCTACTTCTTT

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0003008 system process biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053049 True 2671 lncRNA 0.38 2 30199036 30201831

Neighbor

gene id symbol gene type direction distance location
XLOC_026431 tbc1d17 coding downstream 12738 30166946 ~ 30186298 (-)
XLOC_026430 ccndx coding downstream 40641 30153966 ~ 30158395 (-)
XLOC_026429 nucb1 coding downstream 45794 30140580 ~ 30153242 (-)
XLOC_026428 ppfia3 coding downstream 75923 30044011 ~ 30123113 (-)
XLOC_026427 NA coding downstream 159887 30036697 ~ 30039149 (-)
XLOC_026433 zgc:195001 coding upstream 1032 30202863 ~ 30218504 (-)
XLOC_026434 emc10 coding upstream 39406 30241237 ~ 30248301 (-)
XLOC_026435 lrrc4ba coding upstream 167934 30369765 ~ 30434016 (-)
XLOC_026436 med25 coding upstream 252522 30454353 ~ 30488100 (-)
XLOC_026437 syt3 coding upstream 313534 30515365 ~ 30625219 (-)
XLOC_026426 NA non-coding downstream 175551 30019836 ~ 30023485 (-)
XLOC_026425 NA non-coding downstream 194107 29994895 ~ 30004929 (-)
XLOC_026418 NA non-coding downstream 330304 29868635 ~ 29868732 (-)
XLOC_026417 BX901883.1 non-coding downstream 331496 29867404 ~ 29867540 (-)
XLOC_026439 NA non-coding upstream 493046 30694877 ~ 30696290 (-)
XLOC_026441 BX682556.2 non-coding upstream 598710 30800541 ~ 30800658 (-)
XLOC_026446 NA non-coding upstream 840121 31041952 ~ 31058290 (-)
XLOC_026450 NA non-coding upstream 891381 31093212 ~ 31093764 (-)
XLOC_026453 NA non-coding upstream 972302 31174133 ~ 31177209 (-)

Expression


Co-expression Network