XLOC_026431 (tbc1d17)


Basic Information

Item Value
gene id XLOC_026431
gene name tbc1d17
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30166946 ~ 30186298 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051509
TGAAACTACGTGAACACAGGAGGAGGAATGGAGGCGAAGCCAGAGAGTCACAAGCTGATCTTTGAGAAGGAGGGAGTTTACCTTCACACCAATGCCAAAAGAAGCAATCAGGACACAACCATCCCTGGATTCATCCGGATAGTTGAGCGGGATGGAGAACCGGCGCTAGAATGGAGTCCTGTTGAGGATGATGGGAGAAATGCTCCTGCTGTCTTCTACACCAAGAAGGATGGAGAAGGAGGAGAGGAGGAGACCAAGTTTGACCCTGGTTATGAGCCAGACTGGGCCGTCATCAGTACAGTCAAGCAGGACAGACGGCAGGAGCAGCCACCGGTCAGAGAAACCGGTCACTGGAGCTCGTTCTCTCTGCCACTGTCAGAGCTGTACTCTCTCCGGAGGGCTCGCTTCTCCCTGGGCAGGAACTTCTTGGTTCTGACCACCAGAGGGGGTGATCCTCTCCCTCCTCTGCACTTCCATCGTGGAGGCACCAGAGAGCTGCTCAAAGCCATGCAGCGCTACATCAGACTTGCCCCCTCCCCCATGGATGGCAGGCTCTTTCTGGCGTACCCTCATGATTCTGGAGCCCTGTCACAGTCTTTTGATGAGCTGCATCTCTTTGATGACACCAGTGCAGACCTTGTGTCTAGGTTTATTCAAGACCCTTACGCCACCACGTTTGGGGGGTTCTCCAAGGTGACAAACTTCTTTCGGGGAGCGCTGAGAAATCCAGAGTCGCCCCTAAATAACCGCTCGCCTCAGGACCCCCATTTCCCACATTCGGCTGATGAGGAGCCCGGCTTTGAGCTCATCACCTGCGGTGCGGAGCTCGGTCCCAGACCAGAGGTGAAACGAGGAAAGCCTTTGGATAATTGGGAGCAGTTTTTGGATCCAGAGGGCCGTGTCACAGATCCACAGAAAGTCAAGGAGCTGGTGTTTCGAGGGGGTATTGTTCCATATCTGCGGAAGGAAGTGTGGAAGTTCTTACTAGGGTTTTACCCATGGAACAGCACGACTAAAGAGAGAGAGGACATCCTTATGGTGAAAACGGATGAGTATTTCAGGATGAAGGTTCAGTGGAAATCAGTGAGTGAAGAGCAGGAGATGAGAAACTCTCTTTTCAGAGGATACCGGAGTCTCATTGAACGGGATGTGAATCGAACCGACAGACACAACTCCTTCTTCTCTGGGAATGAGAACCCAGGACTAACACTGCTCCATGATGTGTTGATGACGTACTGCATGTACAATTTTGATCTAGGTTATGTTCAAGGGATGAGTGATCTCCTGTCTCCTCTGCTCTTTGTTACCCAGAATGAGGTGGAGTCCTTCTGGTGCTTGACAGGTTTTATGGATCTTGTGCACCAGAACTTTGAGGAGTCCCAGGAGGCCATGAAACAGCAGCTCCTTCAGCTCAGCCTCCTGCTGAGAGCACTCGACCCAGAGCTGTGTGACTACctagACTCTCAGGACAGCGGTTCACTTTGTTTCTGTTTCCGGTGGTTACTAATTTGGTTCAAGAGAGAGTTCTCTTTTGAAGACATCTTGAGTTTGTGGGAGGTATTGTGGACTCGTCTGCCTTGCGAAAACTTTCACTTACTCATGGCCTGCTCCATTCTCGAGTCCCAAAAAGAGGAACTGATTGGTTCAAACCATGATTTTAACTCTATACTAAAACACATTAATGAGCTGACCATGAAGCTGGATCTGCAGTCAGTACTGTGTGGAGCAGAAGCTATTTATTTGCAGCTGACACACTGCAAGGAATTATCTCCAAAAGTACAGGAAGTTCTTGGTTTGCGCATCCCATCAGGCTCATCTGAACAGAGTCCAGACTCTGAGGCTTGTGAAATGGACACTCTACTCTCTCATTCACAGGCCAGAGGAGCCACGTCCTGCCAGCCTTTTAACGGGCACACACCACAGCGCCCGCCTCCCACATACCCATAATCCCTGAAGAAAGCCTGATCCaactaaatgagaaaaaaaattatgattaatGTGATGAATGTAATCCAGAGGTTGAAATCTAGACAGTTTTATACTGTAATTTGCAAAGAAGGGCTGAGTATTTTGGACTATGGGCATTGCTTATAGTGTGAGCGTTATTGTTCCAGTTATATAGCTCATATTTTATCTGGAAATATTTTATGCATTTCTGAGTGCTGGATATCTAATCGTTTGATTCACTACTTGCAGTACCCAATGCTATGGTATTCTTTATGTAATATATGATGATGTGTATTAAGTTCTGTCGAATTTTCTGCCTTTTTTTTCACTCTCTGTATTGTTACACTCTGTGTCCGCTTCAAGTTATGCTATGCACTACCATTCTGCATGCAATGTAGCGGGAGCTACTTCATATTACTTctattgttagtttttaacatGTAAGCTCTTTCATATGGTGAaagcaactaaaataaaatatttaaatgtag
>TCONS_00051510
AAACTACGTGAACACAGGAGGAGGAATGGAGGCGAAGCCAGAGAGTCACAAGCTGATCTTTGAGAAGGAGGGAGTTTACCTTCACACCAATGCCAAAAGAAGCAATCAGGACACAACCATCCCTGGATTCATCCGGATAGTTGAGCGGGATGGAGAACCGGCGCTAGAATGGAGTCCTGTTGAGGATGATGGGAGAAATGCTCCTGCTGTCTTCTACACCAAGAAGGATGGAGAAGGAGGAGAGGAGGAGACCAAGTTTGACCCTGGTTATGAGCCAGACTGGGCCGTCATCAGTACAGTCAAGCAGGACAGACGGCAGGAGCAGCCACCGGTCAGAGAAACCGGTCACTGGAGCTCGTTCTCTCTGCCACTGTCAGAGCTGTACTCTCTCCGGAGGGCTCGCTTCTCCCTGGGCAGGAACTTCTTGGTTCTGACCACCAGAGGGGGTGATCCTCTCCCTCCTCTGCACTTCCATCGTGGAGGCACCAGAGAGCTGCTCAAAGCCATGCAGCGCTACATCAGACTTGCCCCCTCCCCCATGGATGGCAGGCTCTTTCTGGCGTACCCTCATGATTCTGGAGCCCTGTCACAGTCTTTTGATGAGCTGCATCTCTTTGATGACACCAGTGCAGACCTTGTGTCTAGGTTTATTCAAGACCCTTACGCCACCACGTTTGGGGGGTTCTCCAAGGTGACAAACTTCTTTCGGGGAGCGCTGAGAAATCCAGAGTCGCCCCTAAATAACCGCTCGCCTCAGGACCCCCATTTCCCACATTCGGCTGATGAGGAGCCCGGCTTTGAGCTCATCACCTGCGGTGCGGAGCTCGGTCCCAGACCAGAGGTGAAACGAGGAAAGCCTTTGGATAATTGGGAGCAGTTTTTGGATCCAGAGGGCCGTGTCACAGATCCACAGAAAGTCAAGGAGCTGGTGTTTCGAGGGGGTATTGTTCCATATCTGCGGAAGGAAGTGTGGAAGTTCTTACTAGGGTTTTACCCATGGAACAGCACGACTAAAGAGAGAGAGGACATCCTTATGGTGAAAACGGATGAGTATTTCAGGATGAAGGTTCAGTGGAAATCAGTGAGTTATGTTCAAGGGATGAGTGATCTCCTGTCTCCTCTGCTCTTTGTTACCCAGAATGAGGTGGAGTCCTTCTGGTGCTTGACAGGTTTTATGGATCTTGTGCACCAGAACTTTGAGGAGTCCCAGGAGGCCATGAAACAGCAGCTCCTTCAGCTCAGCCTCCTGCTGAGAGCACTCGACCCAGAGCTGTGTGACTACctagACTCTCAGGACAGCGGTTCACTTTGTTTCTGTTTCCGGTGGTTACTAATTTGGTTCAAGAGAGAGTTCTCTTTTGAAGACATCTTGAGTTTGTGGGAGGTATTGTGGACTCGTCTGCCTTGCGAAAACTTTCACTTACTCATGGCCTGCTCCATTCTCGAGTCCCAAAAAGAGGAACTGATTGGTTCAAACCATGATTTTAACTCTATACTAAAACACATTAATGAGCTGACCATGAAGCTGGATCTGCAGTCAGTACTGTGTGGAGCAGAAGCTATTTATTTGCAGCTGACACACTGCAAGGAATTATCTCCAAAAGTACAGGAAGTTCTTGGTTTGCGCATCCCATCAGGCTCATCTGAACAGAGTCCAGACTCTGAGGCTTGTGAAATGGACACTCTACTCTCTCATTCACAGGCCAGAGGAGCCACGTCCTGCCAGCCTTTTAACGGGCACACACCACAGCGCCCGCCTCCCACATACCCATAATCCCTGAAGAAAGCCTGATCCaactaaatgagaaaaaaaa
>TCONS_00051511
AAACTACGTGAACACAGGAGGAGGAATGGAGGCGAAGCCAGAGAGTCACAAGCTGATCTTTGAGAAGGAGGGAGTTTACCTTCACACCAATGCCAAAAGAAGCAATCAGGACACAACCATCCCTGGATTCATCCGGATAGTTGAGCGGGATGGAGAACCGGCGCTAGAATGGAGTCCTGTTGAGGATGATGGGAGAAATGCTCCTGCTGTCTTCTACACCAAGAAGGATGGAGAAGGAGGAGAGGAGGAGACCAAGTTTGACCCTGGTTATGAGCCAGACTGGGCCGTCATCAGTACAGTCAAGCAGGACAGACGGCAGGAGCAGCCACCGGTCAGAGAAACCGGTCACTGGAGCTCGTTCTCTCTGCCACTGTCAGAGCTGTACTCTCTCCGGAGGGCTCGCTTCTCCCTGGGCAGGAACTTCTTGGTTCTGACCACCAGAGGGGGTGATCCTCTCCCTCCTCTGCACTTCCATCGTGGAGGCACCAGAGAGCTGCTCAAAGCCATGCAGCGCTACATCAGACTTGCCCCCTCCCCCATGGATGGCAGGCTCTTTCTGGCGTACCCTCATGATTCTGGAGCCCTGTCACAGTCTTTTGATGAGCTGCATCTCTTTGATGACACCAGTGCAGACCTTGTGTCTAGGTTTATTCAAGACCCTTACGCCACCACGTTTGGGGGGTTCTCCAAGGTGACAAACTTCTTTCGGGGAGCGCTGAGAAATCCAGAGTCGCCCCTAAATAACCGCTCGCCTCAGGACCCCCATTTCCCACATTCGGCTGATGAGGAGCCCGGCTTTGAGCTCATCACCTGCGGTGCGGAGCTCGGTCCCAGACCAGAGGTGAAACGAGGAAAGCCTTTGGATAATTGGGAGCAGTTTTTGGATCCAGAGGGCCGTGTCACAGATCCACAGAAAGTCAAGGAGCTGGTGTTTCGAGGGGGTATTGTTCCATATCTGCGGAAGGAAGTGTGGAAGTTCTTACTAGGGTTTTACCCATGGAACAGCACGACTAAAGAGAGAGAGGACATCCTTATGGTGAAAACGGATGAGTATTTCAGGATGAAGGTTCAGTGGAAATCAGTGAGTGAAGAGCAGGAGATGAGTGATCTCCTGTCTCCTCTGCTCTTTGTTACCCAGAATGAGGTGGAGTCCTTCTGGTGCTTGACAGGTTTTATGGATCTTGTGCACCAGAACTTTGAGGAGTCCCAGGAGGCCATGAAACAGCAGCTCCTTCAGCTCAGCCTCCTGCTGAGAGCACTCGACCCAGAGCTGTGTGACTACctagACTCTCAGGACAGCGGTTCACTTTGTTTCTGTTTCCGGTGGTTACTAATTTGGTTCAAGAGAGAGTTCTCTTTTGAAGACATCTTGAGTTTGTGGGAGGTATTGTGGACTCGTCTGCCTTGCGAAAACTTTCACTTACTCATGGCCTGCTCCATTCTCGAGTCCCAAAAAGAGGAACTGATTGGTTCAAACCATGATTTTAACTCTATACTAAAACACATTAATGAGCTGACCATGAAGCTGGATCTGCAGTCAGTACTGTGTGGAGCAGAAGCTATTTATTTGCAGCTGACACACTGCAAGGAATTATCTCCAAAAGTACAGGAAGTTCTTGGTTTGCGCATCCCATCAGGCTCATCTGAACAGAGTCCAGACTCTGAGGCTTGTGAAATGGACACTCTACTCTCTCATTCACAGGCCAGAGGAGCCACGTCCTGCCAGCCTTTTAACGGGCACACACCACAGCGCCCGCCTCCCACATACCCATAATCCCTGAAGAAAGCCTGATCC

Function

symbol description
tbc1d17 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in pharyngeal arch. Orthologous to human TBC1D17 (TBC1 domain family member 17).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko04137 Mitophagy - animal
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050522-79 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in pharyngeal arch. Orthologous to human TBC1D17 (TBC1 domain family member 17).

Ensembl:

ensembl_id ENSDARG00000005927

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051509 False 2438 mRNA 0.47 17 30166946 30186298
TCONS_00051510 False 1814 mRNA 0.51 16 30167397 30186296
TCONS_00051511 True 1795 mRNA 0.51 16 30167416 30186296

Neighbor

gene id symbol gene type direction distance location
XLOC_026430 ccndx coding downstream 8551 30153966 ~ 30158395 (-)
XLOC_026429 nucb1 coding downstream 13704 30140580 ~ 30153242 (-)
XLOC_026428 ppfia3 coding downstream 43833 30044011 ~ 30123113 (-)
XLOC_026427 NA coding downstream 127797 30036697 ~ 30039149 (-)
XLOC_026426 NA coding downstream 143461 30019836 ~ 30023485 (-)
XLOC_026432 NA coding upstream 12738 30199036 ~ 30201831 (-)
XLOC_026433 zgc:195001 coding upstream 16565 30202863 ~ 30218504 (-)
XLOC_026434 emc10 coding upstream 54939 30241237 ~ 30248301 (-)
XLOC_026435 lrrc4ba coding upstream 183467 30369765 ~ 30434016 (-)
XLOC_026436 med25 coding upstream 268055 30454353 ~ 30488100 (-)
XLOC_026425 NA non-coding downstream 162017 29994895 ~ 30004929 (-)
XLOC_026418 NA non-coding downstream 298214 29868635 ~ 29868732 (-)
XLOC_026417 BX901883.1 non-coding downstream 299406 29867404 ~ 29867540 (-)
XLOC_026439 NA non-coding upstream 508579 30694877 ~ 30696290 (-)
XLOC_026441 BX682556.2 non-coding upstream 614243 30800541 ~ 30800658 (-)
XLOC_026446 NA non-coding upstream 855654 31041952 ~ 31058290 (-)
XLOC_026450 NA non-coding upstream 906914 31093212 ~ 31093764 (-)

Expression


Co-expression Network