RNA id: TCONS_00051509


Basic Information

Item Value
RNA id TCONS_00051509
length 2438
RNA type mRNA
GC content 0.47
exon number 17
gene id XLOC_026431
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30166946 ~ 30186298 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAAACTACGTGAACACAGGAGGAGGAATGGAGGCGAAGCCAGAGAGTCACAAGCTGATCTTTGAGAAGGAGGGAGTTTACCTTCACACCAATGCCAAAAGAAGCAATCAGGACACAACCATCCCTGGATTCATCCGGATAGTTGAGCGGGATGGAGAACCGGCGCTAGAATGGAGTCCTGTTGAGGATGATGGGAGAAATGCTCCTGCTGTCTTCTACACCAAGAAGGATGGAGAAGGAGGAGAGGAGGAGACCAAGTTTGACCCTGGTTATGAGCCAGACTGGGCCGTCATCAGTACAGTCAAGCAGGACAGACGGCAGGAGCAGCCACCGGTCAGAGAAACCGGTCACTGGAGCTCGTTCTCTCTGCCACTGTCAGAGCTGTACTCTCTCCGGAGGGCTCGCTTCTCCCTGGGCAGGAACTTCTTGGTTCTGACCACCAGAGGGGGTGATCCTCTCCCTCCTCTGCACTTCCATCGTGGAGGCACCAGAGAGCTGCTCAAAGCCATGCAGCGCTACATCAGACTTGCCCCCTCCCCCATGGATGGCAGGCTCTTTCTGGCGTACCCTCATGATTCTGGAGCCCTGTCACAGTCTTTTGATGAGCTGCATCTCTTTGATGACACCAGTGCAGACCTTGTGTCTAGGTTTATTCAAGACCCTTACGCCACCACGTTTGGGGGGTTCTCCAAGGTGACAAACTTCTTTCGGGGAGCGCTGAGAAATCCAGAGTCGCCCCTAAATAACCGCTCGCCTCAGGACCCCCATTTCCCACATTCGGCTGATGAGGAGCCCGGCTTTGAGCTCATCACCTGCGGTGCGGAGCTCGGTCCCAGACCAGAGGTGAAACGAGGAAAGCCTTTGGATAATTGGGAGCAGTTTTTGGATCCAGAGGGCCGTGTCACAGATCCACAGAAAGTCAAGGAGCTGGTGTTTCGAGGGGGTATTGTTCCATATCTGCGGAAGGAAGTGTGGAAGTTCTTACTAGGGTTTTACCCATGGAACAGCACGACTAAAGAGAGAGAGGACATCCTTATGGTGAAAACGGATGAGTATTTCAGGATGAAGGTTCAGTGGAAATCAGTGAGTGAAGAGCAGGAGATGAGAAACTCTCTTTTCAGAGGATACCGGAGTCTCATTGAACGGGATGTGAATCGAACCGACAGACACAACTCCTTCTTCTCTGGGAATGAGAACCCAGGACTAACACTGCTCCATGATGTGTTGATGACGTACTGCATGTACAATTTTGATCTAGGTTATGTTCAAGGGATGAGTGATCTCCTGTCTCCTCTGCTCTTTGTTACCCAGAATGAGGTGGAGTCCTTCTGGTGCTTGACAGGTTTTATGGATCTTGTGCACCAGAACTTTGAGGAGTCCCAGGAGGCCATGAAACAGCAGCTCCTTCAGCTCAGCCTCCTGCTGAGAGCACTCGACCCAGAGCTGTGTGACTACctagACTCTCAGGACAGCGGTTCACTTTGTTTCTGTTTCCGGTGGTTACTAATTTGGTTCAAGAGAGAGTTCTCTTTTGAAGACATCTTGAGTTTGTGGGAGGTATTGTGGACTCGTCTGCCTTGCGAAAACTTTCACTTACTCATGGCCTGCTCCATTCTCGAGTCCCAAAAAGAGGAACTGATTGGTTCAAACCATGATTTTAACTCTATACTAAAACACATTAATGAGCTGACCATGAAGCTGGATCTGCAGTCAGTACTGTGTGGAGCAGAAGCTATTTATTTGCAGCTGACACACTGCAAGGAATTATCTCCAAAAGTACAGGAAGTTCTTGGTTTGCGCATCCCATCAGGCTCATCTGAACAGAGTCCAGACTCTGAGGCTTGTGAAATGGACACTCTACTCTCTCATTCACAGGCCAGAGGAGCCACGTCCTGCCAGCCTTTTAACGGGCACACACCACAGCGCCCGCCTCCCACATACCCATAATCCCTGAAGAAAGCCTGATCCaactaaatgagaaaaaaaattatgattaatGTGATGAATGTAATCCAGAGGTTGAAATCTAGACAGTTTTATACTGTAATTTGCAAAGAAGGGCTGAGTATTTTGGACTATGGGCATTGCTTATAGTGTGAGCGTTATTGTTCCAGTTATATAGCTCATATTTTATCTGGAAATATTTTATGCATTTCTGAGTGCTGGATATCTAATCGTTTGATTCACTACTTGCAGTACCCAATGCTATGGTATTCTTTATGTAATATATGATGATGTGTATTAAGTTCTGTCGAATTTTCTGCCTTTTTTTTCACTCTCTGTATTGTTACACTCTGTGTCCGCTTCAAGTTATGCTATGCACTACCATTCTGCATGCAATGTAGCGGGAGCTACTTCATATTACTTctattgttagtttttaacatGTAAGCTCTTTCATATGGTGAaagcaactaaaataaaatatttaaatgtag

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko04137 Mitophagy - animal
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050522-79 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in pharyngeal arch. Orthologous to human TBC1D17 (TBC1 domain family member 17).

Ensembl:

ensembl_id ENSDART00000017422

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053048 lncRNA downstream 127797 30036697 ~ 30039149 (-) True XLOC_026427
TCONS_00053047 lncRNA downstream 143461 30019836 ~ 30023485 (-) False XLOC_026426
TCONS_00051502 lncRNA downstream 143744 30022078 ~ 30023202 (-) True XLOC_026426
TCONS_00053046 lncRNA downstream 162017 29994895 ~ 30004929 (-) True XLOC_026425
TCONS_00051501 lncRNA downstream 191418 29974468 ~ 29975528 (-) True XLOC_026424
TCONS_00053049 lncRNA upstream 12738 30199036 ~ 30201831 (-) True XLOC_026432
TCONS_00051515 lncRNA upstream 61451 30247749 ~ 30248259 (-) True XLOC_026434
TCONS_00051527 lncRNA upstream 484207 30670505 ~ 30676028 (-) True XLOC_026438
TCONS_00053050 lncRNA upstream 508579 30694877 ~ 30696290 (-) True XLOC_026439
TCONS_00053051 lncRNA upstream 855654 31041952 ~ 31058290 (-) True XLOC_026446
TCONS_00051508 mRNA downstream 8551 30153966 ~ 30158395 (-) True XLOC_026430
TCONS_00051506 mRNA downstream 13704 30140580 ~ 30153242 (-) False XLOC_026429
TCONS_00051507 mRNA downstream 14110 30141324 ~ 30152836 (-) True XLOC_026429
TCONS_00051503 mRNA downstream 43833 30044011 ~ 30123113 (-) False XLOC_026428
TCONS_00051505 mRNA downstream 48090 30075660 ~ 30118856 (-) True XLOC_026428
TCONS_00051512 mRNA upstream 16565 30202863 ~ 30218504 (-) True XLOC_026433
TCONS_00051513 mRNA upstream 54939 30241237 ~ 30248277 (-) False XLOC_026434
TCONS_00051514 mRNA upstream 54939 30241237 ~ 30248301 (-) False XLOC_026434
TCONS_00051516 mRNA upstream 183467 30369765 ~ 30388525 (-) False XLOC_026435
TCONS_00051517 mRNA upstream 184410 30370708 ~ 30434016 (-) False XLOC_026435
TCONS_00051482 other downstream 296822 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 298214 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 299406 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051474 other downstream 396688 29770142 ~ 29770258 (-) True XLOC_026414
TCONS_00051472 other downstream 479183 29686709 ~ 29687763 (-) True XLOC_026412
TCONS_00051520 other upstream 268055 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051529 other upstream 614243 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051585 other upstream 1999836 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 2786676 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 3237894 33424192 ~ 33424328 (-) True XLOC_026505

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000069_02381459_02390386.mRNA True 2064 mRNA 0.50 17 CI01000069 2381315 ~ 2390386 (-)