XLOC_026426


Basic Information

Item Value
gene id XLOC_026426
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30019836 ~ 30023485 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053047
CTTCTACAATTGAACCctttcttttagtttggatgtATAATGTGTTTGTAGAAGCCATGATTCAGCTAAAGTTAACTAAAACAAAGTAATTTGCCTTATAGTGAGCTATTTTGAAATATACAATGCTGAAATTAATGTACATTACCTGACTGTACAGCATGTCTTAATAATATGCTATCAAAAGTCCAGCTCTCAGTTCTGTGTCTTGTACTCGGACAGAATTCAGTCCACTTAGTGAACGAATCGATTCAAGAATCGATTCACATTCCGATTCAGTTCGCTAATTTCGACGCTTGACAACCTGTCAACGACTCCGATCCTCACATTAAATTAACTGTTACGATAAAACTCCATCTGTCATTACACCACTTTAGATTGTTATCAGCATCGGAAGCGTATGAATATGTGTCTGTAATACACCTGTATTACACCAAGATACTTCGGCTAATTATAACACGGAACACCTACCGTTGAGGTGAGTTTCGGGCCACACGTAACTTCGGCAAACACCACATTGATTCAACAGTCCGTCAGTCTCACTCAATAATCAACGAAATTTCCACAACAGCTCCCGCTTCACATGGTTTAAACCGCAGAGGACTCTCATATCATCTCCGAAGTCCACTTTCAGGAGGTCCACGTCGAGTTGTATTTCCACGGTTATCTGTTAAACAAGCGCCTAATAATCTCAAGTCAGTCCTCGCGCGCGACTTTCTGGAAGATTGACATGCAAGTGGTGAACAACCAGAGCAATAATACACCTCTGACACAGCGTGTATGAGCCTGAACTCCACTTTTTCAGCTGCCAAGCCGAGCTGTAAACGAGAGACGCTTAATATGAAAGAAAAGTTGAAATGTTTCGTTTAGTGGATGCAGAAATTCCCGCGGCGAGGTCTGAGTGCTGAAGTCGTGCGGTAAGGTATCTTCATGAAAGGCGGTGAGGGGGACAACACAGCCAGTGGGAGTGAAAGAGGGCTGGTTTAGTAGAAGAGGAATGGACAGAGTGAAAGAAGACATTATGGTGGAGGAAAAAAAGGACGAGGACCATCTGCTAGCGGGCTTCCAAGATGTTGGCACAGACAAGTTTGTGTCTATAAACATCAAATGCAACAAGAAGCTTGTGCTCCAGACTTGAAGACGCAGACCGATTGCTGAAGCTGtttattaaagAAATTTCCATCCCACCAA
>TCONS_00051502
ATTTCGACGCTTGACAACCTGTCAACGACTCCGATCCTCACATTAAATTAACTGTTACGATAAAACTCCATCTGTCATTACACCACTTTAGATTGTTATCAGCATCGGAAGCGTATGAATATGTGTCTGTAATACACCTGTATTACACCAAGATACTTCGGCTAATTATAACACGGAACACCTACCGTTGAGGTGAGTTTCGGGCCACACGTAACTTCGGCAAACACCACATTGATTCAACAGTCCGTCAGTCTCACTCAATAATCAACGAAATTTCCACAACAGCTCCCGCTTCACATGGTTTAAACCGCAGAGGACTCTCATATCATCTCCGAAGTCCACTTTCAGGAGGTCCACGTCGAGTTGTATTTCCACGGTTATCTGTTAAACAAGCGCCTAATAATCTCAAGTCAGTCCTCGCGCGCGACTTTCTGGAAGATTGACATGCAAGTGGTGAACAACCAGAGCAATAATACACCTCTGACACAGCGTGTATGAGCCTGAACTCCACTTTTTCAGCTGCCAAGCCGAGCTGTAAACGAGAGACGCTTAATATGAAAGAAAAGTTGAAATGTTTCGTTTAGTGGATGCAGAAATTCCCGCGGCGAGGTCTGAGTGCTGAAGTCGTGCGGTAAGGTATCTTCATGAAAGGCGGTGAGGGGGACAACACAGCCAGTGGGAGTGAAAGAGGGCTGGTTTAGTAGAAGAGGAATGGACAGAGTGAAAGAAGACATTATGGTGGAGGAAAAAAAGGACGAGGACCATCTGCTAGCGGGCTTCCAAGATGTTGGCACAGACAAGTTTGTGTCTATAAACATCAAATGCAACAAGAAGCTTGTGCTCCAGACTTGAAGACGCAGACCGATTGCTGAAGCTGttta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097575

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053047 False 1188 lncRNA 0.43 3 30019836 30023485
TCONS_00051502 True 881 lncRNA 0.45 2 30022078 30023202

Neighbor

gene id symbol gene type direction distance location
XLOC_026425 NA coding downstream 14907 29994895 ~ 30004929 (-)
XLOC_026424 hsd17b14 coding downstream 42341 29969143 ~ 29977495 (-)
XLOC_026423 bcat2 coding downstream 51781 29949984 ~ 29968055 (-)
XLOC_026422 grna coding downstream 78479 29914427 ~ 29941357 (-)
XLOC_026421 RUNDC1 coding downstream 109289 29902221 ~ 29910547 (-)
XLOC_026427 NA coding upstream 13212 30036697 ~ 30039149 (-)
XLOC_026428 ppfia3 coding upstream 20526 30044011 ~ 30123113 (-)
XLOC_026429 nucb1 coding upstream 117095 30140580 ~ 30153242 (-)
XLOC_026430 ccndx coding upstream 130481 30153966 ~ 30158395 (-)
XLOC_026431 tbc1d17 coding upstream 143461 30166946 ~ 30186298 (-)
XLOC_026418 NA non-coding downstream 151104 29868635 ~ 29868732 (-)
XLOC_026417 BX901883.1 non-coding downstream 152296 29867404 ~ 29867540 (-)
XLOC_026415 NA non-coding downstream 156230 29835165 ~ 29863606 (-)
XLOC_026414 BX901883.6 non-coding downstream 249578 29770142 ~ 29770258 (-)
XLOC_026432 NA non-coding upstream 175551 30199036 ~ 30201831 (-)
XLOC_026439 NA non-coding upstream 671392 30694877 ~ 30696290 (-)
XLOC_026441 BX682556.2 non-coding upstream 777056 30800541 ~ 30800658 (-)
XLOC_026446 NA non-coding upstream 1018467 31041952 ~ 31058290 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G275566 NA non-coding CI01000069 null 2304551 ~ 2304955 (-)