XLOC_026430 (ccndx)


Basic Information

Item Value
gene id XLOC_026430
gene name ccndx
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30153966 ~ 30158395 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051508
AGAACAACACAAGACACACGTGCAACAGGACACATTGAAACTTGAGCACTTTAGGACAGACTTGAGTGTTGGAGCAGTGATGTCTGTGTCTCTGTGGTGCGAGGAGGACTCTGGTCGGGACAGGACTCACCAGGCTTCAGTGCGAGCCCCCTGGGACCCCAGCGCTTCGGGACAGAGGGTCATTCAGAGGCTCCTGCAGTCAGAGGAGAGGTACTTGCCGTCCTCGCTCTACATCTCACTGGTCCAGAGAGAGCCACAGCGCAGAGAGGAGCTGGCCAAATGGACAATGGAGGTGTGCTGTGAATGTGACTGTGACGAGTCTGTGTTTCCTTTGGCTGTCTCTCTGCTGGACCGCTACCTGTCAGCCACTCTATCTCTGCCCGTCTCTCCATCATGTCTGGCTGCTGCCTGTATCCTGTTGGCCTCTAAAGTGACAGAGAGCGACACAGTCAGTGCTGATACTCTCTGTGCAGCAGCCGAGTACGACTTTCTGTCAGCAAACCTGAGGGAAATGGAGCGTGTGGTTTTGGCCACTCTGCGCTGGGATGTGTTGGCGGTGACCCCACAGGACTTCATCCCGCTCTTCCTACGGACTCTCGGCGAGCTCCGGGACGGGGACGGGCACACCGGGGACTTTCTGACAACCATGCGGCGCCACGGGGACACTCTGGTTGCCATGTGTGTGTGCGACTCGCGCTTTCTGGGGACTCCGCCGTCACTGGTGGCCGCGGCCGCACTCAACTCCGCCCTGCGGGGATTAAGAGCCCGGAGCGCGGGAGAGATGAGCCTCATGACCGCTGCCCTCGCCACACTCTGCCAGACAGATGTGGCGCTGCTGCAGTGCTGCACTGAGCTGATAGACGGCGCTCTCAGAGAGAGACTGAGAACTGGAGCACAGGAGCAGAAAGATGGAGACATTGAAGAAGAAGAAAGAGCCAGCACTCCCACAGACCTGAGAGAAATAGACTTTTAAAACGCGGTTCATTCATCACTCGTATATTTATTGCCTTTTATTTATCAGTGAAACTGATTTAAGCATATTTGTTTTGTAACTTCTGAAGTGATctaatttataaaatgttttatttatttgtttgtgggATTACTATTTACTTGTGCCATATTTATTACTTTTGTTGCCATAACTGTGACTTTTTATGTAATTCAGGTTTATCCTTTTCACTTTATGTATTGCATTTCTATgtgttatagtttatttattttcatgttatttattgtgtggtgcatttttatacttaatttattttgcttGTCAGTGTTTCAGCCTGTTTGTAATCAAAGTGTtgggtaaaacaaaacaaatgaagatctattttttgatgtaattaaaataaagtgtatatGTTTGCCAC

Function

symbol description
ccndx Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Acts upstream of or within neuroblast proliferation and neuronal stem cell population maintenance. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Is expressed in central nervous system; hindbrain; neurons; spinal cord; and spinal cord neural tube.

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0044772 mitotic cell cycle phase transition biological_process
GO:0097150 neuronal stem cell population maintenance biological_process
GO:1900087 positive regulation of G1/S transition of mitotic cell cycle biological_process
GO:0007405 neuroblast proliferation biological_process
GO:0000307 cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080917-47 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Acts upstream of or within neuroblast proliferation and neuronal stem cell population maintenance. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Is expressed in central nervous system; hindbrain; neurons; spinal cord; and spinal cord neural tube.

Ensembl:

ensembl_id ENSDARG00000019741

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051508 True 1373 mRNA 0.49 4 30153966 30158395

Neighbor

gene id symbol gene type direction distance location
XLOC_026429 nucb1 coding downstream 724 30140580 ~ 30153242 (-)
XLOC_026428 ppfia3 coding downstream 30853 30044011 ~ 30123113 (-)
XLOC_026427 NA coding downstream 114817 30036697 ~ 30039149 (-)
XLOC_026426 NA coding downstream 130481 30019836 ~ 30023485 (-)
XLOC_026425 NA coding downstream 149037 29994895 ~ 30004929 (-)
XLOC_026431 tbc1d17 coding upstream 8551 30166946 ~ 30186298 (-)
XLOC_026432 NA coding upstream 40641 30199036 ~ 30201831 (-)
XLOC_026433 zgc:195001 coding upstream 44468 30202863 ~ 30218504 (-)
XLOC_026434 emc10 coding upstream 82842 30241237 ~ 30248301 (-)
XLOC_026435 lrrc4ba coding upstream 211370 30369765 ~ 30434016 (-)
XLOC_026418 NA non-coding downstream 285234 29868635 ~ 29868732 (-)
XLOC_026417 BX901883.1 non-coding downstream 286426 29867404 ~ 29867540 (-)
XLOC_026439 NA non-coding upstream 536482 30694877 ~ 30696290 (-)
XLOC_026441 BX682556.2 non-coding upstream 642146 30800541 ~ 30800658 (-)
XLOC_026446 NA non-coding upstream 883557 31041952 ~ 31058290 (-)
XLOC_026450 NA non-coding upstream 934817 31093212 ~ 31093764 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_02371598_02374187 NA coding CI01000069 null 2371193 ~ 2374340 (-)