XLOC_026421 (RUNDC1)


Basic Information

Item Value
gene id XLOC_026421
gene name RUNDC1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29902221 ~ 29910547 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051488
GTTGCAATGTTTTCTGAGGACGTAAGTATTACACGGCGCTGCACCTGCTAAAGCAGCGGTAGCGCATTCATATCTGATAAAAACAAACTGCGCGTCAGTTTAAGTTGGTCGAAGTTATTTTTGGTGAGGCAGCGAGGCTGTCGACTTCAACTGTCAGTCTCATGTCGACGGAGGATTTGTCCACTTCCGACAGCGAGGCTGCCTTCGCGGGAGCCGGGGAGCGCTGGGCGCCCGTGGGAGCCGTGGCCAACCCGGAGGATGAGCACTGGAAGACGGGCGCGCAGGCTGGCTCTGTGTCCTCTGGCGATGGAGAAATGGTCTCCCGGCTGCGGAAGATGGAGGACGAGCAGGAACAGCTGAATTCATCGCTTCTCGCCTTAACATCTCACTTCGCTCAGGTGCAGTTTCGCCTGAAGCAGATCGTGCACGCGCAGAGCGATGAGAAGGAGAGGATGCTGCTGGAGCTCGAGGAGTTCGCCTTCAGAGGATGCCCGCATGTCGTCGGCTGCAGGGCGCAGGACGCTCATATGCTGGAAAACTCTAGTGAACGGGAGAAGAGGGAGCGCTTGGAAGCTCAAAGAAACAAGCAGAAGGAACTGATTTTCCAGCTGAAGAATCAACTTGACGACCTGGAACGCTTCGCCTACCAGGAGGGCAGCTATGACTCACTGCCTCAGTCTGTCGTCATGGAGAGACAGAGGGTAATCATCGATGAGCTGATTAAGAAGCTTGATGTGAATCTGAATGAAGACATTGGCAATCTCACACCAGAGGAGCTCCGGCAGAGAGTGGACGCCGCTATAGCTCAGATCGTCAACCCGGCTCGAGTCAAAGAGCAGCTGGTTGAGCAGCTCAAAACCCAGATCAGAGACCTGGAGATGTTCATTAACTTCATACAGGATGAAGTGGGGAACCCTCTGTTAAATGATGGTACGAAGAGCCAGCCGACCCATGCAGCCGGACCAAACACTGGAGCCACTGGAGGAGTGAAGCGAGTGGATCCTGAACAGGCCCAGCGGATGCGGGAAACAGGGCTCCAGCTGATTCAGAAAGCCTTAGCGGTGCTGCAGATCTTTGCTCTGAGCCAGTTTGGATGTGCTGCAGGTCATGTGCCCCAAAACATGTGGTCTCAGGGTGCCGAGGCTCAAGATTACGGCCCTCTCCTGCAGAAACTAGAAGGAGCGGTGGAGCGAGTCCGTCTGCAAGCCTCCCGCCATCAGCCCTCATCTCTAGATGAACACGTGGTCAGTTATTCTGCCTCCCTATCGCCTGAAGGACCTCGGGACGAACTCACTGCGTCAGTGCGTAAAGAactggccattgcactccgggaCCTGCTGGCCCATGGACTGTACGCTCCTTCTCAGGGCATGAGCCTGGTCCTGGCTCCCATTTCCTGCCTGCTCCCCTTCAGCTCCTCCCCTCAGACCCTGCATCCCTGGGAGCTTTTCGTCAAGTACTATCATTCCAAAAACGGCCAGGCGTTTGTTGAATCGCCCGCTCGGCAGCTCTCACAATCCTTCAGTTTGCCTGTAGGTGGCGGTCCTGTGACAGTCACACCCAAACAGTCTCTGTTATGGGCCATCCACACGGTCCTCAAAGAACACAGACGATTCAAGCGAAGCACAGACTCTGAGTTTAAGGCGTTAGTTTGCATGGCGCTCAATGAGCAGCGGCTTGTGTCCTGGCTCAACCTGCTATGTAAATCTGGGACGCTTATACACTCGCACTATCAGCCCTGGAGCTATATGGCTCAGACGGGCTTTGAAGGGGCTCTGCGCATCCTGGGCCGCATCAGCCATCTCAAATTCAGCCTTCCTGTAGACTTGGCGGTTAGGCAGCTAAAGAACATCAAAGATGCTTTTTAAGCATTGAGGAAAGAAAAGGGGTAAAGGGAACCTCCATAACATctcaatataaaaaaacaacaacaaatatattCTGCAGAGCTGTGTCAAAAACTATTAAAGAAATTGATTCAGCATAGATTTTATAGAGATTTTCAAAATGAATCAGTGATTCAGTAAGTGATTTAGaggttagtttataacagcagatggcgctgtttgTTTCACATACATACTGTTTACTTGCATCCAAaacctaaaataatcattaaGGTTTAAGCGAATTACAAAAGTGCTCATTGTgagctgtgtttacattaatctcATGACATAAAAGCCAACTTACATGAAggttaaaactagcctaaagcaccgtctgctgttaaatactacaCTCAGAAATCCATTCAAGTGAGCTAATTATGCAATATTAATTTCTCAAACTATTTTTCGTCACAGCTTTAATATTTTCAAACTCTATTGATCTCATTTCAGAAATTCAAATCGATTAAAAATGTACTTCCTGAtcaagtgatagttcacccccctccccaaaaaatatttatttactctcAGGCCACTCAAGAAGTAAATGACTTTGTCTTCTTCATTAgaacaggaaaaaataaatatttcgcTGGAAATACtttggtgatttataaaatgaaagtcaatgggatttgaggcaaaataaatacatttggcCCATCAGTCTGAGCAAGAAAATCACCATTTTAACATTATTACCTGTGACCCACAACCTCAACAAACAATTATAAATGTGTTCTTGACAATCTGGAGTGTTTTGTGGCATCATGATGTAAGAGGATGTGGTAATAATGCTGTAAATATTAATCAGTTTCTTGCAAA

Function

symbol description
rundc1 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Predicted to act upstream of or within in utero embryonic development.

GO: NA

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

Ensembl:

ensembl_id ENSDARG00000091962

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051488 True 2717 mRNA 0.48 5 29902221 29910547

Neighbor

gene id symbol gene type direction distance location
XLOC_026420 rpl27 coding downstream 2991 29893966 ~ 29899230 (-)
XLOC_026419 slc25a39 coding downstream 10721 29872819 ~ 29891500 (-)
XLOC_026416 rpl3 coding downstream 30857 29867213 ~ 29871364 (-)
XLOC_026418 NA coding downstream 33489 29868635 ~ 29868732 (-)
XLOC_026417 BX901883.1 coding downstream 34681 29867404 ~ 29867540 (-)
XLOC_026422 grna coding upstream 3880 29914427 ~ 29941357 (-)
XLOC_026423 bcat2 coding upstream 39437 29949984 ~ 29968055 (-)
XLOC_026424 hsd17b14 coding upstream 58596 29969143 ~ 29977495 (-)
XLOC_026425 NA coding upstream 84348 29994895 ~ 30004929 (-)
XLOC_026426 NA coding upstream 109289 30019836 ~ 30023485 (-)
XLOC_026415 NA non-coding downstream 38615 29835165 ~ 29863606 (-)
XLOC_026414 BX901883.6 non-coding downstream 131963 29770142 ~ 29770258 (-)
XLOC_026413 BX901883.4 non-coding downstream 185076 29713211 ~ 29717145 (-)
XLOC_026427 NA non-coding upstream 126150 30036697 ~ 30039149 (-)
XLOC_026432 NA non-coding upstream 288489 30199036 ~ 30201831 (-)
XLOC_026439 NA non-coding upstream 784330 30694877 ~ 30696290 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_02192462_02226350 RUND1, RUNDC1 coding CI01000069 null 2192438 ~ 2226350 (-)