XLOC_026408 (cyth4a)


Basic Information

Item Value
gene id XLOC_026408
gene name cyth4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29487300 ~ 29508959 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051463
TAAAGAAGTAGCCCTTTGAGAACTATTGAGGAAACAAGTTCTCAGAGCTCCGCTGTCATTCGCGGCAGTGACGTCACGCTCCTCGCTCAAGAACTCAGCGCTTGATCATCAATTAAAGCGCACTTCACGCATCTGTCCGTACTGTACGAAACAGAGAACCTCCTCACTGCATTACACACATGAAGTCCCCCTGCAGCACCGCCACCATGGGAACCCAAAGAAAGGACAGCTTCCTCTGGGGGAAAGCACCTTCATCCTTCAATGCAAATGACAAGAAGCAGACTGAGGTCCACAAGCATGTTATTCTTGACGATATCAAGCAACTCAGGATGGAGATCGAAAACATGATGACAGAAATTCAAACAATGGAGGCCGATGATGAGAATAAAAATGTTATGAAGAACAAGAGAATCCAATGTGGAAAAAAGAAGTTCAACATGGACCCCAAGAAGGGCATTCAGTATCTAGTGGATAATGGCCTTTTGGCGTGGAAACCAGAATCTGTGGCGGAGTTCCTCTACAAAGAGGAAGGCCTTAATAAAACGGCTATTGGCAACTTTTTAGGAGAAAGGGAAGAGATCCACCTGCAGATTCTACAGGCTTTTGTTCACCTTCACGAGTTCTCAAACCTTAATCTGGTGCAGGCTTTAAGGCAGTTTCTGTGGAGTTTCCGTCTACCTGGTGAAGCTCAGAAGATTGACCGCATGATGGAGGCTTTTGCTCAGCGCTACTGCACCTGTAACACAGGGGTTTTTCAGTCTACAGACACCTGTTACATCCTCTCCTTCGCTATTATCATGCTCAACACAAGCTTGCACAACCCCAACGTGAAAGACAAAACCACACTAGAACGTTTCATTAGCATGAACAGAGGAATCAACAATGGAGGAGATCTTCCCAGTGAACTACTTGAGAAACTTTATGAGAGCATTAAGAATGAACCCTTTAAGATCCCAGAGGATGACGGCAATGATCTCACTCACACCTTCTTTAATCCTGATCGAGAGGGCTGGCTTCTAAAAGAAGGTGGCAGAATAAAGACTTGGAAGAGGAGGTGGTTTATTCTGACTGACGGCTGCCTCTACTATTTCCAATACACCACTGATAAAGAGCCAAAAGGAATCATTCCCCTGGAGAACTTGTGTGTAAAAGAGGTGGACGATCCACACAAACAGTTCTGTCTGGAGGTGTATAGTCTTCATCAAAAAGGAGAGACGATAAAGGCCTGCAAGACAGAGACAGATGGGAGAGTCGTGATGGGCAAACATCACTCCTACAAACTCAGCACAGCTTCAGAAGAGGAACGTGCAGAATGGATACAAGCCATCAGAGCCTGCATCACAAAAGACCCTTTCTATGACCTGGTCTCAGCACGCAAAAAGAAAATCACCAACCACAACGAACCCCACGACTGAATTCACGAACTCTCGTCTGATATTTCTAAATCACCTGCGCACATACTGAAGAACCAGTGGGATGTTGGTGGGACTCTGGAAATGTTGATTATGGTTTTCAAGGTGCTTATTCTCAGCATACAGGGGTCATCACCACTAACCAGAGGTGTTGTGGTCAAAAGCTTTAAGAATTGCTAAATGAACAGCTTCCTATTTATTTAAAGCTAGTGAGAGACcacgctgtaaaaaaaaagccATGAAATGATTGtggctttttttatttgttaaatattttggaacagacgttacttaaaatgttttgtgttgtgagattgttttcagtttattaacaatttaaataatttcaatCGAAAGCTACATTTCAAAACCTTTACGTTGTTAAGTAGTTAGTCTCTGTGTAGTTCTCCATTTGACTAACTTTAAGTTGTATTCAGAAGTGAATCTAATGAATGTATCTTGTAAATAGTCTTGTAAATACTCTTAATAGCCGTTAGCATTAATGCTTAGCAGGTTGAAATTGTTTGTTTTCTGTACAAATGAATTGATCTATTTAAATTATGTATTGTTATTTAGTTATAAGCTTTTTGTTTTGCacttaataatcaaataaacttGTGAATATGTTAAGAACATGTTGTTAAAATATGATGACTGACTTTACCTAAGCTTTTCTGATTGACAATCTGTACTAAACGAGCCTCATTAAAAAAAGTGATGAACAAATTTGTACAGAAGAGGGCACTGTtgtatgtattttcttttttcacgATTACATTAACAGTCGATGCAGgtacttgattttttatttaatttttctctctttctttctttctttctttctttctttctttctttctttttttctttctttctttttttcatttgaacTCTGTGATGCTTCCTTTGCTGCACTTGTGGTCTACATGAGCGGCAACTATATCCTCATCCGGTGTATCATTTCCTTTATCTCTTGAGTCATGTGCAAACACAGCTGAGAGCTAACACATTGCATGCCCCgtaaaatattataatgtttaatataaaataattccccaagtgctgtttaatagagTCAAGCATatttaaacttaatagttttaataactaatttttaaaaactttttttttttttttttttttgctgttgttgcaagatactagtattgtGCTTAAATTGCAGTTTAACCGCTTAactgctctcccaacaaaaagAATCATTGGattaactcctaatgtcactagttaacacaaCTCAATGCGTTTTTTAACATATCCAATAATTTCTAAAATaccaaccatttggtagaggttgacaTGTTGGTTTATAGTAAAAGTACAAAAGTTAATACAtaaactatgaaaaatctgaaaatataaagtgtaaaattaatttctttaaaaaaaaaaaacatttttgaatactaaatcatttCTATTTTTTGAAGTACGCCATTAAAATATTTCAGTTTCtcgtttataattttttattggtTTTCTTTTAtgataaaaccaaaatcaagtgtagtagtgcaacaggattagttttatttttaatttttttgcaaaccaataatgctgtgtgtgtaaaccattatttgaAATGGTCATTCTTTTAATGACTGTAATATTAAGGGGGTATTCTTAaattacttgtttaaaaaaataaattgttataaaaattacattacaaaataatcATTAAACAAATATAGGAAATTCTGtgtaaatgtccttgctctaaTTAACATCTCTAGTGAAATAGTTtaacaaagaattaaaatgttactcattattgtttttttaagtctCTTGACCGAGCCTGTATTCATTTGTGAagcaaaaacaatataatttttaaatttgtttaccaTTTGTCTTAACTACTACTTgcatatactgtactgtaaaatCTCATTTATTCTTGTGATGTAAAATGAtggatttttgtttttgatttcatCTTTACTCCAGTCATATGATTCTTTAAACCATCCTATCAATCTATTTTGCTGctcaaaaacattttcatattatgtTGAAATCAGCCTTTAAGAAAACAATTTTATGACTGGGaagttgaatttatttaaaatagataatttagTTTTAATGATACTGTTATTCTATAACAGtacaataaactgtaaaaaaaatggctacaatatactgtaatatataaaatattctctatacagtatatacaggcACACACAAACTTTATATGTATAAGTGGTGATCAAAAACATTAGAATGCGTGGTATTTCAGTTGTGTATTGAATTGGCAAGTAGAGTACCCATAAAGCAAATAAAGCTAGGAAAAGGAGATTTAGACAAagagaaaaactaaaaaactagTCTTTCACTGTCTAGTGTCACGCACTGTAATCAGCTTCCTTCACAGAATTCAAAGGAAAGCCTCTGGTTTCAGTTGCGGGAGAAATGTGTTTGAATATTGAAATTCTCAGGAAATATTTTGACACTATGACTGCAGCTGTGAATACAGAAAAGAAGGAATTATCAAATATTAATATCTGTATACATTTACTTTACTGAACTTGTCATTATTTATGTTGTCCTATTTCTGCTTTGATGTATGGTTCTCTTTTGTAAGTTCCTTTGGATGTTTAAATCAAAGTGTaggttaaaaa
>TCONS_00051464
CAACTCAGGATGGAGATCGAAAACATGATGACAGAAATTCAAACAATGGAGGCCGATGATGAGAATAAAAATGTTATGAAGAACAAGAGAATCCAATGTGGAAAAAAGAAGTTCAACATGGACCCCAAGAAGGGCATTCAGTATCTAGTGGATAATGGCCTTTTGGCGTGGAAACCAGAATCTGTGGCGGAGTTCCTCTACAAAGAGGAAGGCCTTAATAAAACGGCTATTGGCAACTTTTTAGGAGAAAGGGAAGAGATCCACCTGCAGATTCTACAGGCTTTTGTTCACCTTCACGAGTTCTCAAACCTTAATCTGGTGCAGGCTTTAAGGCAGTTTCTGTGGAGTTTCCGTCTACCTGGTGAAGCTCAGAAGATTGACCGCATGATGGAGGCTTTTGCTCAGCGCTACTGCACCTGTAACACAGGGGTTTTTCAGTCTACAGACACCTGTTACATCCTCTCCTTCGCTATTATCATGCTCAACACAAGCTTGCACAACCCCAACGTGAAAGACAAAACCACACTAGAACGTTTCATTAGCATGAACAGAGGAATCAACAATGGAGGAGATCTTCCCAGTGAACTACTTGAGAAACTTTATGAGAGCATTAAGAATGAACCCTTTAAGATCCCAGAGGATGACGGCAATGATCTCACTCACACCTTCTTTAATCCTGATCGAGAGGGCTGGCTTCTAAAAGAAGGTGGCAGAATAAAGACTTGGAAGAGGAGGTGGTTTATTCTGACTGACGGCTGCCTCTACTATTTCCAATACACCACTGATAAAGAGCCAAAAGGAATCATTCCCCTGGAGAACTTGTGTGTAAAAGAGGTGGACGATCCACACAAACAGTTCTGTCTGGAGGTGTATAGTCTTCATCAAAAAGGAGAGACGATAAAGGCCTGCAAGACAGAGACAGATGGGAGAGTCGTGATGGGCAAACATCACTCCTACAAACTCAGCACAGCTTCAGAAGAGGAACGTGCAGAATGGATACAAGCCATCAGAGCCTGCATCACAAAAGACCCTTTCTATGACCTGGTCTCAGCACGCAAAAAGAAAATCACCAACCACAACGAACCCCACGACTGAATTCACGAACTCTCGTCTGATATTTCTAAATCACCTGCGCACATACTGAAGAACCAGTGGGATGTTGGTGGGACTCTGGAAATGTTGATTATGGTTTTCAAGGTGCTTATTCTCAGCATACAGGGGTCATCACCACTAACCAGAGGTGTTGTGGTCAAAAGCTTTAAGAATTGCTAAATGAACAGCTTCCTATTTATTTAAAGCTAGTGAGAGACcacgctgtaaaaaaaaagccATGAAATGATTGtggctttttttatttgttaaatattttggaacagacgttacttaaaatgttttgtgttgtgagattgttttcagtttattaacaatttaaataatttcaatCGAAAGCTACATTTCAAAACCTTTACGTTGTTAAGTAGTTAGTCTCTGTGTAGTTCTCCATTTGACTAACTTTAAGTTGTATTCAGAAGTGAATCTAATGAATGTATCTTGTAAATAGTCTTGTAAATACTCTTAATAGCCGTTAGCATTAATGCTTAGCAGGTTGAAATTGTTTGTTTTCTGTACAAATGAATTGATCTATTTAAATTATGTATTGTTATTTAGTTATAAGCTTTTTGTTTTGCacttaataatcaaataaac

Function

symbol description
cyth4a Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Is expressed in blastoderm. Orthologous to human CYTH4 (cytohesin 4).

GO:

id name namespace
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-090624-6 Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Is expressed in blastoderm. Orthologous to human CYTH4 (cytohesin 4).

Ensembl:

ensembl_id ENSDARG00000038011

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051463 False 4063 mRNA 0.35 14 29487300 29508959
TCONS_00051464 True 1707 mRNA 0.40 11 29489336 29506960

Neighbor

gene id symbol gene type direction distance location
XLOC_026407 NA coding downstream 104695 29376613 ~ 29382605 (-)
XLOC_026406 BX005369.2 coding downstream 235235 29251949 ~ 29252065 (-)
XLOC_026405 BX510989.2 coding downstream 577352 28899595 ~ 28909948 (-)
XLOC_026404 eef2kmt coding downstream 614544 28869610 ~ 28872756 (-)
XLOC_026403 BX510989.3 coding downstream 627900 28859284 ~ 28859400 (-)
XLOC_026409 BX571960.1 coding upstream 43682 29552641 ~ 29552762 (-)
XLOC_026410 NA coding upstream 114158 29623117 ~ 29625935 (-)
XLOC_026411 BX571960.2 coding upstream 146002 29654961 ~ 29671653 (-)
XLOC_026412 si:ch73-233k15.2 coding upstream 165349 29674308 ~ 29688399 (-)
XLOC_026413 BX901883.4 coding upstream 204252 29713211 ~ 29717145 (-)
XLOC_026400 BX510989.1 non-coding downstream 581808 28801366 ~ 28905492 (-)
XLOC_026414 BX901883.6 non-coding upstream 261183 29770142 ~ 29770258 (-)

Expression


Co-expression Network