RNA id: TCONS_00051463


Basic Information

Item Value
RNA id TCONS_00051463
length 4063
RNA type mRNA
GC content 0.35
exon number 14
gene id XLOC_026408
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29487300 ~ 29508959 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAAGAAGTAGCCCTTTGAGAACTATTGAGGAAACAAGTTCTCAGAGCTCCGCTGTCATTCGCGGCAGTGACGTCACGCTCCTCGCTCAAGAACTCAGCGCTTGATCATCAATTAAAGCGCACTTCACGCATCTGTCCGTACTGTACGAAACAGAGAACCTCCTCACTGCATTACACACATGAAGTCCCCCTGCAGCACCGCCACCATGGGAACCCAAAGAAAGGACAGCTTCCTCTGGGGGAAAGCACCTTCATCCTTCAATGCAAATGACAAGAAGCAGACTGAGGTCCACAAGCATGTTATTCTTGACGATATCAAGCAACTCAGGATGGAGATCGAAAACATGATGACAGAAATTCAAACAATGGAGGCCGATGATGAGAATAAAAATGTTATGAAGAACAAGAGAATCCAATGTGGAAAAAAGAAGTTCAACATGGACCCCAAGAAGGGCATTCAGTATCTAGTGGATAATGGCCTTTTGGCGTGGAAACCAGAATCTGTGGCGGAGTTCCTCTACAAAGAGGAAGGCCTTAATAAAACGGCTATTGGCAACTTTTTAGGAGAAAGGGAAGAGATCCACCTGCAGATTCTACAGGCTTTTGTTCACCTTCACGAGTTCTCAAACCTTAATCTGGTGCAGGCTTTAAGGCAGTTTCTGTGGAGTTTCCGTCTACCTGGTGAAGCTCAGAAGATTGACCGCATGATGGAGGCTTTTGCTCAGCGCTACTGCACCTGTAACACAGGGGTTTTTCAGTCTACAGACACCTGTTACATCCTCTCCTTCGCTATTATCATGCTCAACACAAGCTTGCACAACCCCAACGTGAAAGACAAAACCACACTAGAACGTTTCATTAGCATGAACAGAGGAATCAACAATGGAGGAGATCTTCCCAGTGAACTACTTGAGAAACTTTATGAGAGCATTAAGAATGAACCCTTTAAGATCCCAGAGGATGACGGCAATGATCTCACTCACACCTTCTTTAATCCTGATCGAGAGGGCTGGCTTCTAAAAGAAGGTGGCAGAATAAAGACTTGGAAGAGGAGGTGGTTTATTCTGACTGACGGCTGCCTCTACTATTTCCAATACACCACTGATAAAGAGCCAAAAGGAATCATTCCCCTGGAGAACTTGTGTGTAAAAGAGGTGGACGATCCACACAAACAGTTCTGTCTGGAGGTGTATAGTCTTCATCAAAAAGGAGAGACGATAAAGGCCTGCAAGACAGAGACAGATGGGAGAGTCGTGATGGGCAAACATCACTCCTACAAACTCAGCACAGCTTCAGAAGAGGAACGTGCAGAATGGATACAAGCCATCAGAGCCTGCATCACAAAAGACCCTTTCTATGACCTGGTCTCAGCACGCAAAAAGAAAATCACCAACCACAACGAACCCCACGACTGAATTCACGAACTCTCGTCTGATATTTCTAAATCACCTGCGCACATACTGAAGAACCAGTGGGATGTTGGTGGGACTCTGGAAATGTTGATTATGGTTTTCAAGGTGCTTATTCTCAGCATACAGGGGTCATCACCACTAACCAGAGGTGTTGTGGTCAAAAGCTTTAAGAATTGCTAAATGAACAGCTTCCTATTTATTTAAAGCTAGTGAGAGACcacgctgtaaaaaaaaagccATGAAATGATTGtggctttttttatttgttaaatattttggaacagacgttacttaaaatgttttgtgttgtgagattgttttcagtttattaacaatttaaataatttcaatCGAAAGCTACATTTCAAAACCTTTACGTTGTTAAGTAGTTAGTCTCTGTGTAGTTCTCCATTTGACTAACTTTAAGTTGTATTCAGAAGTGAATCTAATGAATGTATCTTGTAAATAGTCTTGTAAATACTCTTAATAGCCGTTAGCATTAATGCTTAGCAGGTTGAAATTGTTTGTTTTCTGTACAAATGAATTGATCTATTTAAATTATGTATTGTTATTTAGTTATAAGCTTTTTGTTTTGCacttaataatcaaataaacttGTGAATATGTTAAGAACATGTTGTTAAAATATGATGACTGACTTTACCTAAGCTTTTCTGATTGACAATCTGTACTAAACGAGCCTCATTAAAAAAAGTGATGAACAAATTTGTACAGAAGAGGGCACTGTtgtatgtattttcttttttcacgATTACATTAACAGTCGATGCAGgtacttgattttttatttaatttttctctctttctttctttctttctttctttctttctttctttctttttttctttctttctttttttcatttgaacTCTGTGATGCTTCCTTTGCTGCACTTGTGGTCTACATGAGCGGCAACTATATCCTCATCCGGTGTATCATTTCCTTTATCTCTTGAGTCATGTGCAAACACAGCTGAGAGCTAACACATTGCATGCCCCgtaaaatattataatgtttaatataaaataattccccaagtgctgtttaatagagTCAAGCATatttaaacttaatagttttaataactaatttttaaaaactttttttttttttttttttttgctgttgttgcaagatactagtattgtGCTTAAATTGCAGTTTAACCGCTTAactgctctcccaacaaaaagAATCATTGGattaactcctaatgtcactagttaacacaaCTCAATGCGTTTTTTAACATATCCAATAATTTCTAAAATaccaaccatttggtagaggttgacaTGTTGGTTTATAGTAAAAGTACAAAAGTTAATACAtaaactatgaaaaatctgaaaatataaagtgtaaaattaatttctttaaaaaaaaaaaacatttttgaatactaaatcatttCTATTTTTTGAAGTACGCCATTAAAATATTTCAGTTTCtcgtttataattttttattggtTTTCTTTTAtgataaaaccaaaatcaagtgtagtagtgcaacaggattagttttatttttaatttttttgcaaaccaataatgctgtgtgtgtaaaccattatttgaAATGGTCATTCTTTTAATGACTGTAATATTAAGGGGGTATTCTTAaattacttgtttaaaaaaataaattgttataaaaattacattacaaaataatcATTAAACAAATATAGGAAATTCTGtgtaaatgtccttgctctaaTTAACATCTCTAGTGAAATAGTTtaacaaagaattaaaatgttactcattattgtttttttaagtctCTTGACCGAGCCTGTATTCATTTGTGAagcaaaaacaatataatttttaaatttgtttaccaTTTGTCTTAACTACTACTTgcatatactgtactgtaaaatCTCATTTATTCTTGTGATGTAAAATGAtggatttttgtttttgatttcatCTTTACTCCAGTCATATGATTCTTTAAACCATCCTATCAATCTATTTTGCTGctcaaaaacattttcatattatgtTGAAATCAGCCTTTAAGAAAACAATTTTATGACTGGGaagttgaatttatttaaaatagataatttagTTTTAATGATACTGTTATTCTATAACAGtacaataaactgtaaaaaaaatggctacaatatactgtaatatataaaatattctctatacagtatatacaggcACACACAAACTTTATATGTATAAGTGGTGATCAAAAACATTAGAATGCGTGGTATTTCAGTTGTGTATTGAATTGGCAAGTAGAGTACCCATAAAGCAAATAAAGCTAGGAAAAGGAGATTTAGACAAagagaaaaactaaaaaactagTCTTTCACTGTCTAGTGTCACGCACTGTAATCAGCTTCCTTCACAGAATTCAAAGGAAAGCCTCTGGTTTCAGTTGCGGGAGAAATGTGTTTGAATATTGAAATTCTCAGGAAATATTTTGACACTATGACTGCAGCTGTGAATACAGAAAAGAAGGAATTATCAAATATTAATATCTGTATACATTTACTTTACTGAACTTGTCATTATTTATGTTGTCCTATTTCTGCTTTGATGTATGGTTCTCTTTTGTAAGTTCCTTTGGATGTTTAAATCAAAGTGTaggttaaaaa

Function

GO:

id name namespace
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-090624-6 Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Is expressed in blastoderm. Orthologous to human CYTH4 (cytohesin 4).

Ensembl:

ensembl_id ENSDART00000055408

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053042 lncRNA downstream 104695 29376613 ~ 29382605 (-) True XLOC_026407
TCONS_00051460 lncRNA downstream 577352 28899595 ~ 28909948 (-) True XLOC_026405
TCONS_00051461 lncRNA downstream 581808 28900226 ~ 28905492 (-) True XLOC_026400
TCONS_00051453 lncRNA downstream 582700 28801366 ~ 28904600 (-) False XLOC_026400
TCONS_00053041 lncRNA downstream 584457 28900226 ~ 28902843 (-) False XLOC_026400
TCONS_00052467 lncRNA upstream 114158 29623117 ~ 29624786 (-) False XLOC_026410
TCONS_00052468 lncRNA upstream 114529 29623488 ~ 29625626 (-) False XLOC_026410
TCONS_00052469 lncRNA upstream 115138 29624097 ~ 29625576 (-) False XLOC_026410
TCONS_00052470 lncRNA upstream 115138 29624097 ~ 29625935 (-) False XLOC_026410
TCONS_00052471 lncRNA upstream 115336 29624295 ~ 29625207 (-) True XLOC_026410
TCONS_00051459 mRNA downstream 614544 28869610 ~ 28872756 (-) True XLOC_026404
TCONS_00051456 mRNA downstream 630105 28851175 ~ 28857195 (-) True XLOC_026402
TCONS_00051454 mRNA downstream 658731 28822065 ~ 28828569 (-) False XLOC_026401
TCONS_00051455 mRNA downstream 659058 28823675 ~ 28828242 (-) True XLOC_026401
TCONS_00051452 mRNA downstream 736805 28718817 ~ 28750495 (-) True XLOC_026398
TCONS_00051467 mRNA upstream 146718 29655677 ~ 29671653 (-) False XLOC_026411
TCONS_00051469 mRNA upstream 165349 29674308 ~ 29688399 (-) False XLOC_026412
TCONS_00051470 mRNA upstream 165669 29674628 ~ 29679471 (-) False XLOC_026412
TCONS_00051471 mRNA upstream 177680 29686639 ~ 29688370 (-) False XLOC_026412
TCONS_00051477 mRNA upstream 358254 29867213 ~ 29871364 (-) False XLOC_026416
TCONS_00051462 other downstream 235235 29251949 ~ 29252065 (-) True XLOC_026406
TCONS_00051457 other downstream 627900 28859284 ~ 28859400 (-) True XLOC_026403
TCONS_00051431 other downstream 1839477 27643356 ~ 27647823 (-) False XLOC_026385
TCONS_00051424 other downstream 2403886 27083298 ~ 27083414 (-) True XLOC_026381
TCONS_00051423 other downstream 2421180 27065385 ~ 27066120 (-) True XLOC_026380
TCONS_00051465 other upstream 43682 29552641 ~ 29552762 (-) True XLOC_026409
TCONS_00051466 other upstream 146002 29654961 ~ 29663743 (-) False XLOC_026411
TCONS_00051468 other upstream 146773 29655732 ~ 29663763 (-) True XLOC_026411
TCONS_00051472 other upstream 177750 29686709 ~ 29687763 (-) True XLOC_026412
TCONS_00051474 other upstream 261183 29770142 ~ 29770258 (-) True XLOC_026414

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000069_01965203_01971032.mRNA True 1849 mRNA 0.40 12 CI01000069 1964523 ~ 1971032 (-)