RNA id: CI01000069_01965203_01971032.mRNA


Basic Information

Item Value
RNA id CI01000069_01965203_01971032.mRNA
length 1849
RNA type mRNA
GC content 0.40
exon number 12
gene id CI01000069_01965203_01971032
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 1964523 ~ 1971032 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACCTTTAGCTTTCAATACAAATGACAAGAAGCAGTCTGACGTCCATAAGCATTTGATTCTAGATGACATTCAGAAACTCAGGCTGGAGATCGAAAATATGATGACAGAAATTCAAACGATGGAGGCCGATGATGAGAATAAAAATGTTATGAAGAACAAGAGAATCCAGTGTGGAAAAAAGAAGTTTAACATGGACCCAAAAAAGGGTATCCAGTACCTGGTGGATAATGACCTGTTGGAGTGGAAACCAGAGGCTGTGGCGGAGTTCCTCTACAAAGAAGAAGGCCTCAATAAAACAGCTATTGGCAATTTCTTAGGAGAAAGGGAGGAGATCCACCTTCAGATCTTGCAGGCTTTTGTTCACCTTCATGAGTTCTCAAACCTTAATCTAGTTCAGGCTTTGAGGCAGTTCTTGTGGAGTTTCCGTCTACCTGGTGAGGCTCAGAAGATCGACCGCATGATGGAGGCCTTTGCCCTGCGCTACTGCACCTGTAACGCTGGGGTTTTTCAGTCCACAGACACCTGTTACATCCTTTCCTTCGCTATCATCATGCTCAACACAAGTTTGCACAACCCAAATGTGAAAGACAAGACCACACTAGAACGATTCATCAGCATGAACAGAGGAATCAACAATGGAGGAGATCTTCCCAATGAACTACTCGAGAAACTTTATGAGAGCATTAAGAACGAACCCTTTAAGATCCCAGAAGATGACGGCAATGATCTCACTCACACCTTCTTTAATCCGGATCGAGAGGGCTGGCTTCTAAAAGAAGGTGGCAGAATAAAGACCTGGAAGAGGAGGTGGTTCATTTTGACTGATAGCTGCCTCTATTATTTCCAATATACCACTGACCAAGAACCAAAAGGAATCATTCCCCTAGAGAACTTATGTGTTAAAGAGGTGGAGGACGCACACAAACAGTTCTGTTTGGAGCTGTTTAGCCCTCATCGTAAAGGAGAAACGATAAAGGCATGTAAAACAGAGACAGATGGGAGAGTTGTGATGGGCAAACATCACTCCTACAGACTCAGCGCTGCTTCTGAAGAGGAACGTGCAGACTGGATCCAGTCCATCAGAGCTTGTATCACAAAAGACCCTTTCTATGACCTGGTGTCTGCACGCAAGAAGAAGATCATCAGCCACACCGAACAACACGACTGAAGCTGATTAAACAGCTGACAGATTAATGAACTGACGAGATCTGATCTTTCTGAACAGTTGCACACAGACTGAAGTACCAACAGTAGCCAATGGGACTGACTGAGTGAGCTGGAAATGATGAATGAGGTTCTCAGGGTGCTAATTCTCAGGCCTCCCTCTCACCACGCAGAGGTCACCGCTGCAATGTGTGCAGCCTCTGGGTTCATTCACACAGTGGTGTTGTGGTCAGGAGTTTTGTCAAAAAATTTTCCTATTTAATTATTTAAAGCTTACGAGAAATGTTACAGTGAATAGTTAGCCTTGGAAAGATTGCAGTTTCTTTTATTTGTAAAATATTGTTTAAAAAAGAAAAAAAAAGAAAAAAAAAAAGCCGTAACTCTGAACTTGAAAAAGTTTGTATAGTGTCACCTGGTAACTGTAGGATTTTTCTAGTCGTGTTTGAATTTTATTTTCAATGAAAAACCTTTAAATTAAGCTACATTTAACAGGGTGTTTGTTTTAAATCACTATTTGGCTATTTCTTTTCCTGTGTATTTTTCCATTTGACTAAAACATTTATAATATTATAATTATAGTTTTTTTTTTTAATCTAATCAATATGTCTATCTTGTAAATATTGCAGTGCCAGTTAGCATTAATTGTCATCAGATAGAAATGGTCCATATTCTGTACATAATAAA

Function

GO:

id name namespace
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG:

id description
K18441 CYTH; cytohesin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312530 lncRNA downstream 92807 1858712 ~ 1871716 (-) False G275461
TU312531 lncRNA downstream 93199 1866247 ~ 1871324 (-) True G275461
TU312384 lncRNA downstream 218778 1654902 ~ 1745745 (-) True G275326
TU312380 lncRNA downstream 300946 1655026 ~ 1663577 (-) True G275326
TU312411 lncRNA downstream 319675 1643600 ~ 1644452 (-) True G275347
TU312558 lncRNA upstream 18841 1989873 ~ 1991202 (-) True G275487
TU312577 lncRNA upstream 54419 2025451 ~ 2048682 (-) True G275504
TU312597 lncRNA upstream 94176 2065208 ~ 2155034 (-) True G275519
TU312641 lncRNA upstream 278570 2249602 ~ 2249826 (-) True G275558
TU312643 lncRNA upstream 279549 2250581 ~ 2250815 (-) True G275560
CI01000069_01910549_01915438.mRNA mRNA downstream 48377 1910325 ~ 1916146 (-) True CI01000069_01910549_01915438
CI01000069_01654260_01655849.mRNA mRNA downstream 308674 1654260 ~ 1655849 (-) False CI01000069_01654260_01655849
CI01000069_01653730_01654507.mRNA mRNA downstream 310016 1653706 ~ 1654507 (-) False CI01000069_01653730_01654507
CI01000069_01645966_01647142.mRNA mRNA downstream 317381 1644522 ~ 1647142 (-) False CI01000069_01645966_01647142
CI01000069_01632361_01633951.mRNA mRNA downstream 330572 1632224 ~ 1633951 (-) True CI01000069_01632361_01633951
CI01000069_02042680_02044541.mRNA mRNA upstream 70951 2041983 ~ 2045548 (-) True CI01000069_02042680_02044541
CI01000069_02176375_02186428.mRNA mRNA upstream 205065 2176097 ~ 2186487 (-) True CI01000069_02176375_02186428
CI01000069_02192462_02226350.mRNA mRNA upstream 221406 2192438 ~ 2226350 (-) True CI01000069_02192462_02226350
CI01000069_02234713_02242090.mRNA mRNA upstream 262400 2233432 ~ 2242090 (-) True CI01000069_02234713_02242090
CI01000069_02245512_02248667.mRNA mRNA upstream 274445 2245477 ~ 2249182 (-) True CI01000069_02245512_02248667
TU312389 other downstream 317197 1645768 ~ 1647326 (-) True CI01000069_01645966_01647142
TU312233 other downstream 1008733 813235 ~ 954003 (-) True G275196
TU312215 other downstream 1018719 926923 ~ 945804 (-) True G275178
TU310316 other downstream 1917309 46896 ~ 47214 (-) False G273476
TU312710 other upstream 640143 2621752 ~ 2630247 (-) False G275624
TU312711 other upstream 640143 2621752 ~ 2630316 (-) True G275624
TU312760 other upstream 1017994 2989026 ~ 2991817 (-) True G275668
TU312791 other upstream 1021472 2992504 ~ 3078168 (-) True G275699
TU312851 other upstream 1441941 3426149 ~ 3426374 (-) True G275755

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051463 False 4063 mRNA 0.35 14 NC_007114.7 29487300 ~ 29508959 (-)