RNA id: TCONS_00051460


Basic Information

Item Value
RNA id TCONS_00051460
length 1865
lncRNA type lincRNA
GC content 0.31
exon number 2
gene id XLOC_026405
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 28899595 ~ 28909948 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttttaaaatgctgcagtaaaaagcttttatgtgaagtacacacatagattagcatgtcctgtataagatctgaccattgtttttttctacttatttgaaagggggtatttatagtactttttctatgtaataccctgtttcttcaaaatgctgcagtaaaaaggtttcatgtgaagtacacatatagtctgggatgtcctgtgtaagaactgaccattgtttttttctacttatttaaaatgcggtctttatagtattttatattatgttaataccccgtctctttaaaatgctgcagtaaaaaggtttcatgtgaagtacatatatagtatgggatgtcctgtataagaactgaccattgtttttttttacttatttaaaatggggtctttatagcactttattttatgttaataccccatttctctaaaatgctgcagtaaataggtttcatgtgaagtggagatatagtatgggatgtcgtgtataataactgaccattgttttttttctacttatttaaataggggtctttataacactttgaaatataatattatacaatttctccaaaacactgcagtaataaggtgAAGTGTGAAGTActtatatagtatgggatgtcctgtgtaagaactgaccattgtttttttcctacttatttgaaatgtagtctttatagcactttttataaggttattaccccgtttctccaaaacagtgcagtaaaaagatttcatatgaagtacacatatagCATGGGATGTTCTGTACAGGAACTGATCATTGTTTttgtctacttattggaaattgggtctttataacactgagtaatgttaatacccaatttctccaaaacactgcagtaacaagtctttattTGAAGTTTAGAATGTGATGTCCTGTATCAgacctgactattgttttttttctacatattttaaatgagcattttttgtccaaattgctgaagtaaaaagtattcagatgtagtatatatgcatatagcatGGGACATCCAGTATCAAACCAGATCagtcttttatttaacttatgtCAAACAATGTATTTATGCACTTTAAAGACTTTATAGCTCAATAATAgcacatttctccaaaatgctgcagtaagttaTTATGAGGTATGCATATAATATTGGATGTCCTGTCCATTGTTTTCTTCTGCTCACCTGAATGAGGTCTTTTACATGAGGTATGCATGTACATCCTGTATCAGAACCAAACTTTGTAgtttttctacttatttctttatagcactttaaagtgtgttaatggtacatttctccaaaatgctgcagtaaaacaggCTTCATATGATGTATGCTTAGTATTTGACTGCCTGCATCTGATCTTATTGttgttctattctacttataacaaataataaggtctttacagtcatctaaagtgtaataatgccccatatcccatatactgaaagaagcataaccttttaaatcccctttaaatgaaataaacatatatttgtaattcaaacaatgttttgttggactactttatgattgttttcactTTCTGAGGTTAGCCACGTTGTAAAAAATTGCATTTAACCTTATTTGCAATGTACTGTAGTTGGCTAGGAGAAGTAGAAACGCATTCTGTGTATTTAGAAATCatgtaatttgctatctgggtttgatctgctataaaatcatttgaagcaaaaagataaacttgaggaaattaaaggtaagcccagaaaccaatttcttaaaataacaacagtcaaacaaagctaataaattgtttaataaagcatACGTGGGAGGAAAGGGGGATAAACTTATATTTCGTTGTTATCTCTCTTTTCTGGGCGAAATG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000150946

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051458 lncRNA downstream 28447 28869610 ~ 28871148 (-) False XLOC_026404
TCONS_00052466 lncRNA downstream 142975 28754734 ~ 28756620 (-) True XLOC_026399
TCONS_00053040 lncRNA downstream 143069 28752313 ~ 28756526 (-) False XLOC_026399
TCONS_00053039 lncRNA downstream 143069 28752313 ~ 28756526 (-) False XLOC_026399
TCONS_00053038 lncRNA downstream 143160 28752313 ~ 28756435 (-) False XLOC_026399
TCONS_00053042 lncRNA upstream 466665 29376613 ~ 29382605 (-) True XLOC_026407
TCONS_00052467 lncRNA upstream 713169 29623117 ~ 29624786 (-) False XLOC_026410
TCONS_00052468 lncRNA upstream 713540 29623488 ~ 29625626 (-) False XLOC_026410
TCONS_00052469 lncRNA upstream 714149 29624097 ~ 29625576 (-) False XLOC_026410
TCONS_00052470 lncRNA upstream 714149 29624097 ~ 29625935 (-) False XLOC_026410
TCONS_00051459 mRNA downstream 26839 28869610 ~ 28872756 (-) True XLOC_026404
TCONS_00051456 mRNA downstream 42400 28851175 ~ 28857195 (-) True XLOC_026402
TCONS_00051454 mRNA downstream 71026 28822065 ~ 28828569 (-) False XLOC_026401
TCONS_00051455 mRNA downstream 71353 28823675 ~ 28828242 (-) True XLOC_026401
TCONS_00051452 mRNA downstream 149100 28718817 ~ 28750495 (-) True XLOC_026398
TCONS_00051463 mRNA upstream 577352 29487300 ~ 29508959 (-) False XLOC_026408
TCONS_00051464 mRNA upstream 579388 29489336 ~ 29506960 (-) True XLOC_026408
TCONS_00051467 mRNA upstream 745729 29655677 ~ 29671653 (-) False XLOC_026411
TCONS_00051469 mRNA upstream 764360 29674308 ~ 29688399 (-) False XLOC_026412
TCONS_00051470 mRNA upstream 764680 29674628 ~ 29679471 (-) False XLOC_026412
TCONS_00051457 other downstream 40195 28859284 ~ 28859400 (-) True XLOC_026403
TCONS_00051431 other downstream 1251772 27643356 ~ 27647823 (-) False XLOC_026385
TCONS_00051424 other downstream 1816181 27083298 ~ 27083414 (-) True XLOC_026381
TCONS_00051423 other downstream 1833475 27065385 ~ 27066120 (-) True XLOC_026380
TCONS_00051408 other downstream 2236430 26663048 ~ 26663165 (-) True XLOC_026371
TCONS_00051462 other upstream 342001 29251949 ~ 29252065 (-) True XLOC_026406
TCONS_00051465 other upstream 642693 29552641 ~ 29552762 (-) True XLOC_026409
TCONS_00051466 other upstream 745013 29654961 ~ 29663743 (-) False XLOC_026411
TCONS_00051468 other upstream 745784 29655732 ~ 29663763 (-) True XLOC_026411
TCONS_00051472 other upstream 776761 29686709 ~ 29687763 (-) True XLOC_026412

Expression Profile

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