RNA id: TCONS_00052468


Basic Information

Item Value
RNA id TCONS_00052468
length 735
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id XLOC_026410
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29623117 ~ 29625935 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgACAACGCCTgcgtcgtctcttcacccaacggattcatcctcgtacaagactgaagtaaaggtgaaatgactaaggtaagctctgaccttcacttaagttCACGTTACGccacagccattgatgttgaaacactgatgctaccaatcacccctcgcttgattattaaaggtaatgttgatgccttcctcatttttattagatttttaaatgtcaagtttttcacagatttgttgtgagcagtttcttgtacacACTCTTtttcttccagaagttccaccagtacctccagtagtagtaaatattagacaaagattttttttaactatagtttttatttttattagcaattttactgggcatgtgtgtttgtttgcttggtttttaataggcagagcatggaatgtcaactttgtttctacaaacaaatttaattattcacaaacacctctaatttagtccttctttcccccttttagtcttattccttggagggtcgagtggtcatgggacctcacctgggtttcacaactgactttggatctggtctgaaactgaagtatgctgaagatgccttttgcactctggaatttaagggccgtgttgcagacacaatttgtttgtctgtgctggagaccagaggggaagctgtctttaaaaggatggggctcttatgccatatgtgaagttacctattcaggtgctttttgggcaccagtttggagatggaagacag

Function

GO:

id name namespace
GO:0050793 regulation of developmental process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053042 lncRNA downstream 240883 29376613 ~ 29382605 (-) True XLOC_026407
TCONS_00051460 lncRNA downstream 713540 28899595 ~ 28909948 (-) True XLOC_026405
TCONS_00051461 lncRNA downstream 717996 28900226 ~ 28905492 (-) True XLOC_026400
TCONS_00053041 lncRNA downstream 720645 28900226 ~ 28902843 (-) False XLOC_026400
TCONS_00051458 lncRNA downstream 752340 28869610 ~ 28871148 (-) False XLOC_026404
TCONS_00051473 lncRNA upstream 87585 29713211 ~ 29717145 (-) True XLOC_026413
TCONS_00053043 lncRNA upstream 209539 29835165 ~ 29856468 (-) False XLOC_026415
TCONS_00051476 lncRNA upstream 209539 29835165 ~ 29863585 (-) False XLOC_026415
TCONS_00051475 lncRNA upstream 209539 29835165 ~ 29863604 (-) False XLOC_026415
TCONS_00053045 lncRNA upstream 209539 29835165 ~ 29863606 (-) False XLOC_026415
TCONS_00051463 mRNA downstream 114529 29487300 ~ 29508959 (-) False XLOC_026408
TCONS_00051464 mRNA downstream 116528 29489336 ~ 29506960 (-) True XLOC_026408
TCONS_00051459 mRNA downstream 750732 28869610 ~ 28872756 (-) True XLOC_026404
TCONS_00051456 mRNA downstream 766293 28851175 ~ 28857195 (-) True XLOC_026402
TCONS_00051454 mRNA downstream 794919 28822065 ~ 28828569 (-) False XLOC_026401
TCONS_00051467 mRNA upstream 30051 29655677 ~ 29671653 (-) False XLOC_026411
TCONS_00051469 mRNA upstream 48682 29674308 ~ 29688399 (-) False XLOC_026412
TCONS_00051470 mRNA upstream 49002 29674628 ~ 29679471 (-) False XLOC_026412
TCONS_00051471 mRNA upstream 61013 29686639 ~ 29688370 (-) False XLOC_026412
TCONS_00051477 mRNA upstream 241587 29867213 ~ 29871364 (-) False XLOC_026416
TCONS_00051465 other downstream 70726 29552641 ~ 29552762 (-) True XLOC_026409
TCONS_00051462 other downstream 371423 29251949 ~ 29252065 (-) True XLOC_026406
TCONS_00051457 other downstream 764088 28859284 ~ 28859400 (-) True XLOC_026403
TCONS_00051431 other downstream 1975665 27643356 ~ 27647823 (-) False XLOC_026385
TCONS_00051424 other downstream 2540074 27083298 ~ 27083414 (-) True XLOC_026381
TCONS_00051466 other upstream 29335 29654961 ~ 29663743 (-) False XLOC_026411
TCONS_00051468 other upstream 30106 29655732 ~ 29663763 (-) True XLOC_026411
TCONS_00051472 other upstream 61083 29686709 ~ 29687763 (-) True XLOC_026412
TCONS_00051474 other upstream 144516 29770142 ~ 29770258 (-) True XLOC_026414
TCONS_00051479 other upstream 241778 29867404 ~ 29867540 (-) True XLOC_026417

Expression Profile

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