RNA id: TCONS_00051471


Basic Information

Item Value
RNA id TCONS_00051471
length 704
RNA type mRNA
GC content 0.34
exon number 2
gene id XLOC_026412
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29674308 ~ 29688399 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTGACGCAGAATTCTTGGTTACAGGCGGAGCAACTGAAATGGAGAAAAGAAACCGAAACCTAAGTCTCCTCCATTATAAACAAAAGATTTACCTGTAGTTTTCTTTACTCAGTCTAGCAGGTTTACATCGGCATAGCAGGCTGTACGATGGACAGCAGATTGTACGCAAGCAAAAGATGGCCAGATTGAGACTTGTGAACTTCACCACTGGCTCCCTCCTTTAAAATGTTACTCTGCTGAAGTAcatgtgaataaaaaaatattttcaagacaGCAAATAACAGTGTCATGAAATGAGTTCGGCTCATGTGGACGAAAAGAGTCCAAAATGAGAATCTATGCATTTGGGGATTTACAATGCTATTATTCActttggaatgttttttttttttacttgcatgtatttgcacaatatttttatacataattgCCACATATTACATAGTAATGTAATAAGTTGTACTTTCATTACATATTAAGTGAGATTCTTGCCAATGTTTGTTTCATGTCCCATGTGTCAATATAGAGCTGCACTAGGAAGACCAGCAGACCTTTTGTAATTTGTGTTTGTAATCAATGTAATTGCATGATAAAATGATGAAATGGGAGATGTAATGGATTTATTCTTAAATTATCATTGTGTATGaagtgtgctttttaaataaacttgttttgAAATGCaagaaaaatactataaaaata

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000151147

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052470 lncRNA downstream 60704 29624097 ~ 29625935 (-) False XLOC_026410
TCONS_00052468 lncRNA downstream 61013 29623488 ~ 29625626 (-) False XLOC_026410
TCONS_00052469 lncRNA downstream 61063 29624097 ~ 29625576 (-) False XLOC_026410
TCONS_00052471 lncRNA downstream 61432 29624295 ~ 29625207 (-) True XLOC_026410
TCONS_00052467 lncRNA downstream 61853 29623117 ~ 29624786 (-) False XLOC_026410
TCONS_00051473 lncRNA upstream 24841 29713211 ~ 29717145 (-) True XLOC_026413
TCONS_00053043 lncRNA upstream 146795 29835165 ~ 29856468 (-) False XLOC_026415
TCONS_00051476 lncRNA upstream 146795 29835165 ~ 29863585 (-) False XLOC_026415
TCONS_00051475 lncRNA upstream 146795 29835165 ~ 29863604 (-) False XLOC_026415
TCONS_00053045 lncRNA upstream 146795 29835165 ~ 29863606 (-) False XLOC_026415
TCONS_00051470 mRNA downstream 7168 29674628 ~ 29679471 (-) False XLOC_026412
TCONS_00051467 mRNA downstream 14986 29655677 ~ 29671653 (-) False XLOC_026411
TCONS_00051463 mRNA downstream 177680 29487300 ~ 29508959 (-) False XLOC_026408
TCONS_00051464 mRNA downstream 179679 29489336 ~ 29506960 (-) True XLOC_026408
TCONS_00051459 mRNA downstream 813883 28869610 ~ 28872756 (-) True XLOC_026404
TCONS_00051477 mRNA upstream 178843 29867213 ~ 29871364 (-) False XLOC_026416
TCONS_00051478 mRNA upstream 178916 29867286 ~ 29870848 (-) False XLOC_026416
TCONS_00051480 mRNA upstream 179612 29867982 ~ 29869120 (-) False XLOC_026416
TCONS_00051483 mRNA upstream 184449 29872819 ~ 29891500 (-) False XLOC_026419
TCONS_00051484 mRNA upstream 192160 29880530 ~ 29891456 (-) False XLOC_026419
TCONS_00051468 other downstream 22876 29655732 ~ 29663763 (-) True XLOC_026411
TCONS_00051466 other downstream 22896 29654961 ~ 29663743 (-) False XLOC_026411
TCONS_00051465 other downstream 133877 29552641 ~ 29552762 (-) True XLOC_026409
TCONS_00051462 other downstream 434574 29251949 ~ 29252065 (-) True XLOC_026406
TCONS_00051457 other downstream 827239 28859284 ~ 28859400 (-) True XLOC_026403
TCONS_00051474 other upstream 81772 29770142 ~ 29770258 (-) True XLOC_026414
TCONS_00051479 other upstream 179034 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051481 other upstream 180265 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051482 other upstream 180529 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051520 other upstream 765983 30454353 ~ 30488094 (-) False XLOC_026436

Expression Profile

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