RNA id: TCONS_00053038


Basic Information

Item Value
RNA id TCONS_00053038
length 2055
lncRNA type inter_gene
GC content 0.36
exon number 5
gene id XLOC_026399
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 28752313 ~ 28756620 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGCAGCCAGCAGATTTGAATTCGTGTTGTCCAATAGGATTCTTGCCCGCGCCGTGCATTCATAATGCCAGCTGATTACGTGCGACGGTTAATCTCCAGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCATCGACGGAGGATGGACCTGAAGGACGCAAAGAAGCTGGAATACGCTCGTGAAGACAAAGCACAGACATTTGCTGaaaatGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTCCTGCAATTGGTGAGGATGAATCATCTTTTAAGAGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGtcatGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAAGAGAATAGAAGTTTGCAGATGATCTAACAGtgggatgatgatgatgctccATACCCAACTCTACAGATGGCTGAAAGTCAGTTTTAAAGGCATTATTACATCCTTCGCTGTTTACTGTGTTTTCAACTTGGCTTATCCACGctacataaagaatgcaaagAATGAACATCAGCAACTCCCCAAGATGGAGCAACACTTTGAATTTGAACAACAGCAACGATGTGAAGATGGAGATCCAAAATTACAAGAAAAATCAGTGCAGCTGTCCAAGAGAACTTGTATTGCGGTGTCTGCTTTAAACAGCAATGCTTGGATCTTTGCATTTACTTTGATGCGTGCGTTTCGAGTCTGTGCATCAGTATTTTAAGACTAGCAGCTATAGACATTTCAATAACATTGCCCAAATCAACTGAGAAGCACAAGATGAAACAATGCTAAGACTTTTCTCCGCCCAACATCCTTGGATTGACACATTCAGGTGTTCAAATTTATCTGTTTTCGTGTGCATGTGAGACCGCTAATGGAGAAGAAATGACACTTTcctaatgaaatacattttaaatgtcaatactGCACTGGTTTCTGTGTAGCAAGTTTTTAATTCTGCTATTGTATGATTCATATTTCCATGCAAATACAGTAAGAGTTTGACTTTGAATGGGGTGTTATAAACCAAGACAGACGGACTTTCAGGCTCTTGAAACATACTCTGCTGATAAACTGTTTCttaagaatgtttagaaatttcaaatcaaatgtgtaaaactgtttgatcaaaagtgtttttgagatctaaaatgaTTAAAGGTATACTTTAAGTGACATGTTTCAATGTACTGTATGGAAAAAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAATGTAGAGTGCAGTGCACTAGCAAAAATGTACTTTATTAGGTCTACTGTTGTTTTAGAAAAATTACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGATGCactgatgttaaaaaaataatattaagttttttttgctgtttcataaaatgttttaaaatgtttaagcagctatttttttaattttatgcatcTGGTATGACTTTGTGATAGTTTAAAACTTTCATCTTCTAAAAAGGTGACAATGTTATTGTTTTGAATCTTtcaatgtgtgtttgtgataaAATGTTACAGGTATAAAAGTACAATTATCGTGCAGTTTGTACTCATggaaaaatattgctttttattcttttaaaatgatgtaatgtttaaacattcatcctgtaaaaatgttgatatttaatatgtttaataaatgtgataaATGAAATTTATTGTGTATGGAGTACAAATCTGAAATGAAAGAGTACAAAATTCATCCCTATGGAGGAGAAATTGTACCTTTTTTAAAGGTACATTATTGTACCATAGCCCAAGTAAGGTACAAATTAGTCAGCAGAGGTACATATTTGACCCATTAAGGTACATACTGctagggtacaaatatgtacccatGTGAAAGGGTACAACAGGTGTACCCTTgagggtactgccccagtgacaagcgATTGTAccccaaaaggtacaaattttgcacattttttctgacag

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0010646 regulation of cell communication biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0003401 axis elongation biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0035295 tube development biological_process
GO:0045165 cell fate commitment biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0023051 regulation of signaling biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0003260 cardioblast migration biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060026 convergent extension biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:0009790 embryo development biological_process
GO:0003677 DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051449 lncRNA downstream 53457 28695762 ~ 28698856 (-) True XLOC_026397
TCONS_00051451 lncRNA downstream 53467 28695762 ~ 28698846 (-) False XLOC_026397
TCONS_00051450 lncRNA downstream 55265 28695762 ~ 28697048 (-) False XLOC_026397
TCONS_00051447 lncRNA downstream 249820 28444234 ~ 28502493 (-) True XLOC_026394
TCONS_00051453 lncRNA upstream 44931 28801366 ~ 28904600 (-) False XLOC_026400
TCONS_00051458 lncRNA upstream 113175 28869610 ~ 28871148 (-) False XLOC_026404
TCONS_00051460 lncRNA upstream 143160 28899595 ~ 28909948 (-) True XLOC_026405
TCONS_00053041 lncRNA upstream 143791 28900226 ~ 28902843 (-) False XLOC_026400
TCONS_00051461 lncRNA upstream 143791 28900226 ~ 28905492 (-) True XLOC_026400
TCONS_00051452 mRNA downstream 1818 28718817 ~ 28750495 (-) True XLOC_026398
TCONS_00051448 mRNA downstream 87022 28634467 ~ 28665291 (-) True XLOC_026396
TCONS_00051445 mRNA downstream 324115 28045680 ~ 28428198 (-) False XLOC_026393
TCONS_00051446 mRNA downstream 543312 28048436 ~ 28209001 (-) True XLOC_026393
TCONS_00051443 mRNA downstream 632221 28039535 ~ 28120092 (-) False XLOC_026393
TCONS_00051454 mRNA upstream 65630 28822065 ~ 28828569 (-) False XLOC_026401
TCONS_00051455 mRNA upstream 67240 28823675 ~ 28828242 (-) True XLOC_026401
TCONS_00051456 mRNA upstream 94740 28851175 ~ 28857195 (-) True XLOC_026402
TCONS_00051459 mRNA upstream 113175 28869610 ~ 28872756 (-) True XLOC_026404
TCONS_00051463 mRNA upstream 730865 29487300 ~ 29508959 (-) False XLOC_026408
TCONS_00051431 other downstream 1104490 27643356 ~ 27647823 (-) False XLOC_026385
TCONS_00051424 other downstream 1668899 27083298 ~ 27083414 (-) True XLOC_026381
TCONS_00051423 other downstream 1686193 27065385 ~ 27066120 (-) True XLOC_026380
TCONS_00051408 other downstream 2089148 26663048 ~ 26663165 (-) True XLOC_026371
TCONS_00051368 other downstream 3476962 25274142 ~ 25275351 (-) True XLOC_026342
TCONS_00051457 other upstream 102849 28859284 ~ 28859400 (-) True XLOC_026403
TCONS_00051462 other upstream 495514 29251949 ~ 29252065 (-) True XLOC_026406
TCONS_00051465 other upstream 796206 29552641 ~ 29552762 (-) True XLOC_026409
TCONS_00051466 other upstream 898526 29654961 ~ 29663743 (-) False XLOC_026411
TCONS_00051468 other upstream 899297 29655732 ~ 29663763 (-) True XLOC_026411

Expression Profile

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