XLOC_026467 (ddx42)


Basic Information

Item Value
gene id XLOC_026467
gene name ddx42
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31879442 ~ 31893008 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051572
ATGACGTAAAACACAGTCGCCGAGAAGTGTGCAAGATAGCCCGAAGTGGTAAATACGCTGTGGATAAATAAGGTGTCCACCCACTTTAGAAGACCGCTGTTTTCACCTTATCAGTGAcagcCCAACAACGATGAACTGGAACAAGGGAGGCCCAAGTGGCAAGCGAGGGTTTGGATTTGGAGGATTCGCTCTTGCGACTGGGAAGAAAGAGGAGCCTCATCTCCCACAGAAGGCCCACTCCTCTTTTGGGGGCACGGGACCGTCAGGTGGATATGGCAAGAATCAGCAGCTATCGTCGTTTTACAAAATAGGAACAAAACGAGCCAATTTCGACGAGGAGAACGCTTACTttgaggatgatgaagaggagtCCACTGCTGACCTGCCGTATATACCCGCTGAGAACTCTCCCACTAGGAAGCAGTTCCAGTCTGGAGGGGGAGGAGGAGGTGGGGGCTCGGACAGTGAGGATGACCCTCTTGATGCCTTTATGGCTGAAGTGGAGgacCAGGCAGCAAAGGATATGAAAAAACTTGAGGAaaaggaaaaagagaaaaagatgGCCAAGGGTATTCGGGATGACATTGAAGAGGAAGATGACCAAGAAGCATATTTTCGCTACATGGCGGAGAACCCAACAGCTGGGCTGACccaagaggaggaggaggaagaagtgGACTATGATAGTGATGGAAACCCTATTGCCCCTACTACAAAAAAGATTATCATGCCCCTGCCCCCCATAGACCACTCAGAGATTGACTATTCTCCATTTGAGAAGAACTTCTATAATGAGCATGAGGAAATCAGCAGTTTGACTGGGGCCGAAGTGGTGGAACTGAGACGGAAACTCAACTTAAAGGTTTCAGGCGCAGCCCCTCCTAAACCAGCAACCAGTTTTGCCCACTTTGGATTTGATGAACAGCTCATGCATCAGATTCGTAAATCTGAGTACACTCAACCGACCCCCATCCAGTGCCAGGGCGTTCCTATAGCTTTGAGTGGCAGAGATGCGATTGGCATTGCCAAAACCGGTAGTGGAAAGACGGCAGCTTTCATTTGGCCAATTCTGGTGCACATTATGGACCAGAAGGAGCTGGAGCCGGGAGAAGGGCCCATTGCTGTGATCGTCTGCCCCACTAGAGAGCTCTGTCAACAGATTCATGCTGAATGCAAGCGCTTCGGGAAAGCATACGGCCTCCGCTCAGTGGCAGTATATGGAGGTGGCAGCATGTGGGAACAAGCCAAAGCCCTACAGGAAGGAGCTGAAATTGTTGTCTGCACCCCAGGCCGTCTGATCGATCATGTAAAAAAGAAAGCTACGTCTCTGCAGCGAGTGACCTTTCTAGTATTTGATGAAGCTGATCGCATGTTTGATATGGGCTTTGaatacCAAGTGAGATCCATTGCCAGCCATGTTCGACCTGATCGACAAACTCTGTTATTCAGTGCAACTTTCCGGAAGAAAATCGAAAAACTAGCACGAGATATTTTGGTCGACCCCATTCGTGTGGTGCAGGGAGACATAGGAGAGGCTAATGAAGACATCACTCAGATAGTGGAGGTGCTGCAGTCTGGCCAGGACAAATGGGGTTGGCTGACCCGCAGACTGGTGGAGTTCACATCCGCTGGCTCAGTGCTGGTGTTTGTTACTAAAAAGGCTAACTGTGAGGAGCTGGCAACAAATTTAATTCAGGAAGGATATAGCCTGGGTCTGCTTCATGGAGACATGGATCAGAGTGAGAGGAACAAAGTCATAGCAGACTTTAAAAAGAAGAATCTGCCTGTATTGGTGGCGACCGATGTTGCTGCTCGTGGGTTGGATATTCCATCTATTCGCACTGTTGTCAACTATGATGTAGCCCGGgacattgacacacatacacatcgaATTGGTAGAACAGGTCGTGCTGGAGAAAAAGGTGTAGCTTATACATTGCTCACCACTAAAGACACTTCATTTGCCGGTGACCTGGTTCGTAATTTAGAGGGAGCCAATCAGAGTGTTTCAAAAGATCTGTTAGACCTGGCTATGCAGAATCCCTGGTTCAGGAAATCTCGCTTTAAGGGAGGAAAAGGGAAGAAGATTAATATTGGAGGTGGAGGCTTGGGCTATAGAGAGAGACCTGGCCTTGGATCGGAATGCTCTGAGCGCAGTGGTGGTTCTATTGCAGCAGCTCTTGGCAACTATGAAACCTTCAAACCCTCCACTGGAGCAATGGGAGACCGTATGTCTGCCTTAAAGCAAGCATTtcagGCTCAGTACAAAAACCACTTTGTCGCGGCATCAGGTGTGCCTCCTAAACTCACCACAAAGTCCAGCAGCTCATCTGGATGGACCAGCGCTGGAAGTCTGAGTTCTTTGCCAACAGGAGCACCTGAGGGGCCGGACAGACCTCACCTGTCCTTCTCGCCATCATCCTCTTCCTCGTTTTCCATGCCACCGCCTCCAGCTCTCACCTCAGGCATTAAAATGAGTGGCTTCAGCAGTGCGGGCACCCTCAGCTCAATTTCAGACTCTTACTCTAGCTCTTCTTCAAAAGAGCCGTCCCGTAGCGAGAGGCACTCTGATGACAGGGGCCGGCATGGAGATAGTCATAGTCACCGTCATAGTGACAGGCATAGTGGAGGAGAgcgagaacgagagagagagcgtgatcgTGACCGCGATCGCCACGGGGAAAGGGACCGCCATAGTGACAGAGATCGGCATGGGGATAGCCGAAATGGTGAAGGGAGCCATAGGGACAGAGAGGGACGGTCAGAAAGAGATGAAGGTGAGAAGTCAGGGTCTCACAAAGAAAGCTTTGCAGTTCCTGATCCTCCGAAACGTAAGAAAAGCAGATGGGACAATTGAAGTGTACCAGAAAGTAGCAGTCAAATGTTCTTAGATCAGAAGGGGCTTTACTTGTCTGCTTTTTTCTGTATGTTAGATGAAGCTGTATAAAGCGTGACTAGGAGACTCATCACTTTATCATCTTTATAACTTAATGAACCCATTGAAGAAAGGTGTTTTCAACCATTTTAGAATTGTGAATTGGCAGAATGAGTAACAAAAGGCATATTGAGGCCAAGAGTTGTTAAATTAGATGTTCCTGTTCTATGGCAaacaggttttgttttgtttttctttctaaaatgtttttgaaatctctgttttaatgtttttttttattatgttgtgCTGCTTTACAAGCTTATTGTGAACTATATCATTTTGTTAAGACTTCTGTAGTGTTTTAATGTGTGCTGTCCTGTCTCAAACACCACCATTTTCAATGCCCATGAATGAGCTTGTCTTTTGTTCATGTGTTAATATTTTGAattcagatctttttttttttttagcaaacacTTCAGATTCTTGTCTTTCTGCGCTCATACATCAACATATAATATGGTTCTAAAGAAAGAAACCAACTCTACAGttaattctcacacacacacacacacacattctgaccAAACTAACAACATGATTGGGAGTGTAACAAAACCATCATTGAGCCTACAATAAAGACTGTGCTGTGATATATTCTTGGATTCCTTTGGTCCTGAGGTGAATATTGGAGATAGCTGTTATGAAGCTTTGTTACAAACTGAATCTGATGACCATTATGAATATGGATATTCTAGTGTACAGTTCTGTCTGTGGCCATGCttctgaaataataaacaaatggtTTAGAGGTT
>TCONS_00051573
ggagtCCACTGCTGACCTGCCGTATATACCCGCTGAGAACTCTCCCACTAGGAAGCAGTTCCAGTCTGGAGGGGGAGGAGGAGGTGGGGGCTCGGACAGTGAGGATGACCCTCTTGATGCCTTTATGGCTGAAGTGGAGgacCAGGCAGCAAAGGATATGAAAAAACTTGAGGAaaaggaaaaagagaaaaagatgGCCAAGTAAGAGTCTGTCatgattacattaaaaaaaagaaaatcaacacTGTTCATCCTGATAATATTTTAACAGAGGATGGGAATAGATGGGGTTTATGGGTAGAGTATGGGTTTCCATGGGTGATTGAGCGAGTCGcagggaagtttttttttctccatttcttttTCCAGGGGTATTCGGGATGACATTGAAGAGGAAGATGACCAAGTGAGTGACCCTCTTGACGTTACTACCGCCGTCATATCTTTGCCACTGCAACGACTGTGTCCCGCTACTCTTAATCTTTCTTTCCTGTTCATTATAAGTAGAATTAAACATCAGTTTACAGACTGAGGCTGAGCCATTATGTTATTGGTGATGGAGATGGTGCAAGGGAGA

Function

symbol description
ddx42 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be active in nucleus. Orthologous to human DDX42 (DEAD-box helicase 42).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-050706-53 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be active in nucleus. Orthologous to human DDX42 (DEAD-box helicase 42).

Ensembl:

ensembl_id ENSDARG00000037928

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051572 False 3693 mRNA 0.46 18 31879442 31893008
TCONS_00051573 True 577 lncRNA 0.45 2 31889596 31891825

Neighbor

gene id symbol gene type direction distance location
XLOC_026465 limd2 coding downstream 4304 31850851 ~ 31875138 (-)
XLOC_026464 map3k3 coding downstream 33626 31815184 ~ 31845816 (-)
XLOC_026463 gfap coding downstream 74961 31792441 ~ 31804481 (-)
XLOC_026462 kcnh6a coding downstream 95360 31728871 ~ 31784082 (-)
XLOC_026461 ccdc47 coding downstream 163285 31705454 ~ 31716157 (-)
XLOC_026468 rnf113a coding upstream 26034 31919042 ~ 31924643 (-)
XLOC_026469 NA coding upstream 42689 31935697 ~ 31957366 (-)
XLOC_026470 BX511080.1 coding upstream 173975 32066983 ~ 32071468 (-)
XLOC_026471 baxb coding upstream 181798 32074806 ~ 32079916 (-)
XLOC_026472 tnnt1 coding upstream 264132 32157140 ~ 32170878 (-)
XLOC_026460 NA non-coding downstream 228731 31650253 ~ 31650711 (-)
XLOC_026457 NA non-coding downstream 279160 31511470 ~ 31600282 (-)
XLOC_026453 NA non-coding downstream 702233 31174133 ~ 31177209 (-)
XLOC_026450 NA non-coding downstream 785678 31093212 ~ 31093764 (-)
XLOC_026446 NA non-coding downstream 821152 31041952 ~ 31058290 (-)
XLOC_026474 NA non-coding upstream 292891 32185899 ~ 32222085 (-)
XLOC_026477 NA non-coding upstream 432126 32325134 ~ 32337695 (-)
XLOC_026481 NA non-coding upstream 672186 32565194 ~ 32572052 (-)
XLOC_026483 NA non-coding upstream 705636 32598644 ~ 32603191 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G274564 NA non-coding CI01000069 null 3452564 ~ 3456210 (+)