G274564


Basic Information

Item Value
gene id G274564
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3452564 ~ 3456210 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU311516
AGCACCTGTATTCACTTCAAAAGACAAACCAAGAAACACCTCTAGTAAACAGAAACAAGTTGAATGGGGATGTTTATCAAAAGATGAGAAGTTCTTACTGGGGTGCAGACAACAATTTCAGCCCCTTCCTGTAGAGCTTTGGCTTGTTCCCACATGCTGCCGCCTCCGTACACTGCCACTGAGCGGAGGCCGTATACCTTCCCGAAGCGCTTGCATTCGGCATGGATCTGAACCACAGAGATAAGCATTGCAAAAACCCAAAACACACTACAAAAATTTGATTCATGACTAAGATTACTTCATAAGAAAAACATATTTAAATCTTTTGCTCAGAAATTATTTTTCATCTCCTTCCACTCATTCATCTCTTACACATTCCCGTAACATGAAGGAACCTTTTTTCTCACTGACCTGTTGACAGAGCTCTCTGGTGGGGCAGACAATCACAGCAATGGGTCCTTCTCCCGGCTCCAGCTCCTTCTGGTCCATGATGTGCACCAGCATTGGCCAAATAAAAGCTACCGTCTTTCCGCTACCGGTTTTGGCAATGCCAATCATGTCTCTACCACTCAAAGATATGGGAACACCCTAGTGAAACAACACATTATTGTAGAAAAATACCTAAAATTACTACTTTGATGACAGCATAAACAAACAAAGGGTCATTTGTGGGTGGGTTTGACAGCTCACCTGGCACTGGATGGGTGTAGGTTGAGTGTACTCGGATTTACGGATCTGGTGCATAAGCTGCTCATCAAATCCAAAGTGGGCAAAACTGGTGGCTGGTTTAGGAGGGGCTGCACCTGAAACCTGTTCATTTGGAATATGGTTTAATGTTGGTTGAAAAAAAGGGAATGACCATTTGTGTATGTACTTGTGTGTGCTGCCATTGACCTTCAGGTTGAGTTTCTGTCTCAGTTCCACCACTCCAGCCCCAGTCAGACTGCTGAGTTCCTCATGCTCAATATAGAAGTTCTTCTCAAAGGGAGGATAGTCACTCTGAGTGGTCTATGGGGGGCAGGGGCAAGATAATCTTTTTGGTAGTAGGAGCAATGGGATTCCCATCGCTGTCATAGTCCACTTCTTCCTCCTCTTCCTCTTGGGTCAACCCAGCTGTTGGGTTCTCCGCCATGTAACGGAAATATGCTTCCTGCAAAGAACACAAAACCATGCTTTAGATCAAGACAAAGAGCCGCAGGCCTTTATATCTGGAATATCAAGAAGTCATCCAAATATTAAATAGCAAGTTCTCGCCAACAACTCAAAATCACATATCTGACAGCACTGATGTGGTGTCAATGACATTACATTTTAATTGGTCACTGATATTTTCTCAAATCTCATGTTTCAGTCACAAAAGAATCGCTCTACCTGTAAACATTTAAAGAAAATAGATAATGACTGAGAACCTTTGAATCTTTAAAAATCAAATCTGATTAGTGCATTTAAAGCCTTAAAAACAAGCTACAGACCTACTCTGCACCTACTCTATCACCAAAAGCACATTTTAATGCCTCAGTCCGTAAACTGATGTAGATCTATACATATATATATATATATATATATATATAAAGAGTGTAAGAAAGAAAGATAGAAAGAGGGGTGGGGCACAGCCATTGCTGTGGCAAAGATACGATGGCGGAAGTAACGTCAAGAGGGTCACTCACTTGGTCATCTTCTTCTTCAATGTCATCCCGTATACCCCTGGAAGAAACAAGCGGAGAAAAAAAAAACTTCCCTGCGACTCGCTCAATCACCCATGGAAACCCATATTCTACCCATAAACCCCCATTTTCTATTCCCATCCTCTCTGCTATAAATATTATCTGGATGAATGGTCTTAAAAGTATTATTATTATTATTTTTTTCTGTGATAATTGCAGAATCTTACTTGGCCATATTTTTCTCTTTTTCCTTTTCCTCAAGTTTCTTCATGTCTTTTGCTGCTTGGTCCTGAAAGAAGTCAAAAACATTTAAAAGAACAAAAATTAAAGCAAAAGAGCCGCAATGTTCACTGCCGGCTCTAATAGAGATCAGTTCAGGAACGCAGCTCTCACCTCCACCTCAGCCATAAAGGCATCAAGGGGGTCATCCTCACTGTCTGAGCCTCCTCCCCCTCCCCCTCCACCTCCAGATTGGAACTGCTTTCTAGTGGGAGAGTTCTCGGCAGGTATATATGGCAGATCTGCACTGCTAGACTCCTCTTCATCATCCTCAAAATAACTAAAAATACATTTCAAGCATTAAATGTAATTGCCTCTTTCGTTCACCGAACACCAATTCATTTACTCCACCTCAAAAGGAGAAATTAGTCATAATGACAGTCACAGTCACCTAAAAGGTGCATCAAAAGCAATGAAAGTGAATGATGACTAAAATCTCCTTTTGTGTTCTACATAAAAAATGAAAACATACAATTTATGAACAACATGAGGGTGGGTACATAAAGAGAGATGTTCCTCTGGGGTTGAACTGGGTTTTTCAATTTTAATTTTGAGGTGCAATGTCTTCATTTTAAAAGTGGTCACATTTTAAGTACTTACGCATTCTCCTCGTCGAAATTGGCTCGTTTTGTTCCTATTTTGTAAAAAGACGAAAGCTGCTGATTCTTGCCATATCCACCTGATGGTCCTGAACTTCCAAATGCGGAGTGGGCCTTCTGAGAAACAGGAGGCTCCTCTTTCTTCCCACTCGCAAGAGAGAATCCCCCGAATCCAAAGCCTCGCTTGGCACTCGGGCCTCCCTTGTTCCAGTTCATTGCTGCAACAAAATAGCGTCAGACTGGGTGTTAAAAACGGGTTTTACACACACAAAAACCCATTAGGCTACTGTAGCCTAACAATTAAAAAGTCTGCTTGTAAATGTCGCTTAGCTTTTCTGTTGTTGCCATAACTCACACATTTTCAGTGTTCTCTCAGTATTTTGTTGTCAAACAGCAAGTAGGCGAGACTGCCTCGTTATGCTGTGCTGATGGCCGTGGAGAGGCCTTGAGCTGTGTGTATACGGATTATGCTTGCTTCGATTACTTTCACTATGCGTGCGTCAAACAGTAATAGATATATTTCTTCGCTTTCTTTTTATTTACCTGTCACTGATACGACGAAAAGAGCGATCTTCTAAAGTGGGTGGACACCTTATTTATCCACAGCGTATTTACCACTTCAAGCTATCTTTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311516 True 3177 lncRNA 0.42 2 3452564 3456210

Neighbor

gene id symbol gene type direction distance location
CI01000069_03375220_03376645 LY6E coding upstream 75785 3375008 ~ 3376807 (+)
CI01000069_03306832_03309710 BRAFLDRAFT_264459, MGC82392, GDF8, DCAF7 coding upstream 142854 3306417 ~ 3309710 (+)
CI01000069_03293097_03294020 NA coding upstream 158424 3293030 ~ 3294140 (+)
CI01000069_03292108_03292508 NA coding upstream 159780 3292108 ~ 3292784 (+)
CI01000069_03273461_03285388 MYLK5 coding upstream 166221 3273461 ~ 3286343 (+)
CI01000069_03465840_03471086 STRADA coding downstream 9630 3465840 ~ 3471867 (+)
CI01000069_03479877_03487573 SNRNP70 coding downstream 23667 3479877 ~ 3487771 (+)
CI01000069_03488885_03492635 LIN7B coding downstream 32675 3488885 ~ 3492746 (+)
CI01000069_03496673_03500800 NA coding downstream 40463 3496673 ~ 3500895 (+)
CI01000069_03509187_03563871 KCNC3A coding downstream 52692 3508902 ~ 3564360 (+)
G274592 NA non-coding upstream 30060 3420898 ~ 3422504 (+)
G274589 NA non-coding upstream 39794 3412500 ~ 3412770 (+)
G274588 NA non-coding upstream 40092 3412228 ~ 3412472 (+)
G274555 NA non-coding upstream 80544 3370388 ~ 3372020 (+)
G274601 NA non-coding downstream 202020 3658230 ~ 3658435 (+)
G274651 NA non-coding downstream 272672 3728882 ~ 3731583 (+)
G274715 NA non-coding downstream 281055 3737265 ~ 3737533 (+)
G274716 NA non-coding downstream 304691 3760901 ~ 3761638 (+)
G274721 NA non-coding downstream 316884 3773094 ~ 3773544 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 557676 2893418 ~ 2894947 (+)
G274270 NA other upstream 771406 2672624 ~ 2681158 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 1280371 2031954 ~ 2040427 (+)
G273359 NA other upstream 2973483 477727 ~ 479081 (+)
G274603 NA other downstream 343813 3800023 ~ 3803501 (+)
G274619 NA other downstream 672918 4129128 ~ 4133378 (+)
CI01000069_04556116_04558002 PYY, PYYA other downstream 1099099 4555269 ~ 4558480 (+)
G274953 NA other downstream 1468257 4924467 ~ 4926687 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026467 ddx42 coding NC_007114.7 CM002887.2 31879442 ~ 31893008 (-)
mexican tetra (Astyanax mexicanus) G11013 NA non-coding NC_035898.1 CM008301.1 16019628 ~ 16020852 (-)