CI01000069_03488885_03492635 (LIN7B)


Basic Information

Item Value
gene id CI01000069_03488885_03492635
gene name LIN7B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3488885 ~ 3492746 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_03488885_03492635.mRNA
ATGTCATCGTATTATCATACGGGGAAAGAGGTGGATATGGCGGCGATGACGGAACCGCTCTGCTTGGAAAGAGATGTTTGCAGGGTGATAGAACTGTTGGACAGGCTTCAAAGAAGCGGTGAGCTTCCTCCTCCTAAACTTCAGGCTCTACAGAGAGTTCTACAGAGCAAGTTCTGTGCTGCCATCAGAGAGGTCTACGAGCAGCTTTATGATACATTGGATATTGTAGGTGGGCCTGAGGTCCGAGCACAAGCCACTGCCAAGGCCACAGTAGCAGCATTTGCTGCCAGTGAAGGTCACGCACACCCAAGAGTGGTTGAACTCCCTAAAACAGACGAGGGGCTCGGGTTCAACATCATGGGGGGGAAAGAACAAAACTCTCCCATCTACATATCCAGGGTCATCCCAGGAGGTGTTGCTGACCGACAGGGTGGTCTGAAGAGAGGAGATCAACTGCTCTCTGTTAATGGAGTGAGTGTGGAGGGAGAACACCATGAGAAAGCTGTAGAGCTGCTAAAGGCAGCTCAGGGTTCAGTGAAACTGGTGGTGCGTTACACCCCTAAAGTCCTCGAAGAGATGGAAGCCAGGTTTGAGAAGATGAGAAGCGCCAGGAGACGCCAGCAACATACCAGCTACTCGTGAGTGTGACTTTATCACTTTCTTTTCCTTCACCCTCCTATTTCTTTGGTTCTTTACCTTTTTTTCATCTTCTCTCAGCCGATTAGTAATCACAAGACATTTTTGTTTCCTTTA

Function

symbol description
lin7b Predicted to enable L27 domain binding activity. Predicted to be involved in maintenance of epithelial cell apical/basal polarity; neurotransmitter secretion; and protein localization to basolateral plasma membrane. Predicted to act upstream of or within exocytosis and protein transport. Predicted to be located in plasma membrane and presynapse. Predicted to be part of MPP7-DLG1-LIN7 complex. Predicted to be active in basolateral plasma membrane; cell-cell junction; and synapse. Is expressed in brain; central nervous system; eye; and retinal inner nuclear layer. Orthologous to human LIN7B (lin-7 homolog B, crumbs cell polarity complex component).

GO:

id name namespace
GO:0043005 neuron projection cellular_component

KEGG:

id description
K19931 LIN7; protein lin-7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_03488885_03492635.mRNA True 753 mRNA 0.49 5 3488885 3492746

Neighbor

gene id symbol gene type direction distance location
CI01000069_03479877_03487573 SNRNP70 coding upstream 1114 3479877 ~ 3487771 (+)
CI01000069_03465840_03471086 STRADA coding upstream 17018 3465840 ~ 3471867 (+)
CI01000069_03375220_03376645 LY6E coding upstream 112106 3375008 ~ 3376807 (+)
CI01000069_03306832_03309710 BRAFLDRAFT_264459, MGC82392, GDF8, DCAF7 coding upstream 179175 3306417 ~ 3309710 (+)
CI01000069_03293097_03294020 NA coding upstream 194745 3293030 ~ 3294140 (+)
CI01000069_03496673_03500800 NA coding downstream 3927 3496673 ~ 3500895 (+)
CI01000069_03509187_03563871 KCNC3A coding downstream 16156 3508902 ~ 3564360 (+)
CI01000069_03585382_03594261 ALDH16A1 coding downstream 92550 3585296 ~ 3594436 (+)
CI01000069_03595904_03596883 NA coding downstream 102980 3595726 ~ 3597100 (+)
CI01000069_03612923_03614657 NA coding downstream 120001 3612717 ~ 3614739 (+)
G274564 NA non-coding upstream 32675 3452564 ~ 3456210 (+)
G274592 NA non-coding upstream 66381 3420898 ~ 3422504 (+)
G274589 NA non-coding upstream 76115 3412500 ~ 3412770 (+)
G274588 NA non-coding upstream 76413 3412228 ~ 3412472 (+)
G274601 NA non-coding downstream 165484 3658230 ~ 3658435 (+)
G274651 NA non-coding downstream 236136 3728882 ~ 3731583 (+)
G274715 NA non-coding downstream 244519 3737265 ~ 3737533 (+)
G274716 NA non-coding downstream 268155 3760901 ~ 3761638 (+)
G274721 NA non-coding downstream 280348 3773094 ~ 3773544 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 593997 2893418 ~ 2894947 (+)
G274270 NA other upstream 807727 2672624 ~ 2681158 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 1316692 2031954 ~ 2040427 (+)
G273359 NA other upstream 3009804 477727 ~ 479081 (+)
G274603 NA other downstream 307277 3800023 ~ 3803501 (+)
G274619 NA other downstream 636382 4129128 ~ 4133378 (+)
CI01000069_04556116_04558002 PYY, PYYA other downstream 1062563 4555269 ~ 4558480 (+)
G274953 NA other downstream 1431721 4924467 ~ 4926687 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025460 lin7b coding NC_007114.7 CM002887.2 31933893 ~ 31944709 (+)