CI01000069_03595904_03596883


Basic Information

Item Value
gene id CI01000069_03595904_03596883
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3595726 ~ 3597100 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_03595904_03596883.mRNA
GTTTATAAGACGAACGCGCACCTTCATTTCACTCACAGCTTCTGGAAGGTCTGAATAGGTTCTTGCTTCAACAGTGATTGAACGGAACTTCGATCTCGCTGGAATTTCGCTTTGAAGAACTCTAATTTATTATTTTTTACCAACCTTTTGATAATAAACCGACAAAAAATCCGCCGAAATGGATTCTCAGATTCGCCAGAACTACGACCGCGACTGCGAGGCTTTGATCAACAAGATGGTGAATCTGGAGCTTTACGCTGGCTACACTTACACTTCCATGGCTCACTATTTTAAACGGGATGATGTGGCTCTTCCCGGTTTTGCCAAGTTCTTCAAGAAGAACAGCGAGGAGGAGCGCGAGCATGCCGAGAAATTCATGGAGTTCCAGAACAAGAGGGGCGGACGCATTGTCCTTCAGGACGTAAAGAAACCTGAGCGCGATGAGTGGGACAATGGGCTGGTTGCTATGCAGTGCGCTCTTCAGCTGGAGAAGAACGTCAACCAGGCTCTGCTGGACCTGCATAAGGCCGCATCTGAGAAGGGAGACCCTCATCTGTGTGACTTCCTGGAGACTCACTACCTGAATGAGCAGGTTGAGGCCATCAAGAAGCTTGGTGACCACATCACCAACCTTTCCAAGATGGATGCTGGCAAAAACAGGATGGCGGAGTACTTGTTTGACAAGCACACCCTGGATGGAGACAGCTAAATGCAGAACCCTGCTTCCTGCAAAACATCCAGCTATACTCTAGGTTTAAATCATCAAGCTAATGTTGTCATGCAGCACAAAATTTTAGACTTGAAAGATTGAAAAGTTAACATTTAGAGGCTACATGTCCCTGTATAACATGCATGGCACTTTTAAATAGCCATCAAGCCAATGCTTTCTTGAATGTACACTGGTTTTAATCTGCTGAATTTGGTGA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K00522 FTH1; ferritin heavy chain

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_03595904_03596883.mRNA True 926 mRNA 0.46 4 3595726 3597100

Neighbor

gene id symbol gene type direction distance location
CI01000069_03585382_03594261 ALDH16A1 coding upstream 1290 3585296 ~ 3594436 (+)
CI01000069_03509187_03563871 KCNC3A coding upstream 31366 3508902 ~ 3564360 (+)
CI01000069_03496673_03500800 NA coding upstream 94831 3496673 ~ 3500895 (+)
CI01000069_03488885_03492635 LIN7B coding upstream 102980 3488885 ~ 3492746 (+)
CI01000069_03479877_03487573 SNRNP70 coding upstream 107955 3479877 ~ 3487771 (+)
CI01000069_03612923_03614657 NA coding downstream 15647 3612717 ~ 3614739 (+)
CI01000069_03625937_03626925 NA coding downstream 28837 3625937 ~ 3627161 (+)
CI01000069_03631837_03632897 NA coding downstream 34737 3631837 ~ 3632963 (+)
CI01000069_03636156_03639756 NA coding downstream 38880 3635980 ~ 3639985 (+)
CI01000069_03643296_03647762 SYT13, SYT5B, SYT5A coding downstream 46055 3643155 ~ 3647786 (+)
G274564 NA non-coding upstream 139516 3452564 ~ 3456210 (+)
G274592 NA non-coding upstream 173222 3420898 ~ 3422504 (+)
G274589 NA non-coding upstream 182956 3412500 ~ 3412770 (+)
G274588 NA non-coding upstream 183254 3412228 ~ 3412472 (+)
CI01000069_03375220_03376645 LY6E non-coding upstream 218919 3375008 ~ 3376807 (+)
G274601 NA non-coding downstream 61130 3658230 ~ 3658435 (+)
G274651 NA non-coding downstream 131782 3728882 ~ 3731583 (+)
G274715 NA non-coding downstream 140165 3737265 ~ 3737533 (+)
G274716 NA non-coding downstream 163801 3760901 ~ 3761638 (+)
G274721 NA non-coding downstream 175994 3773094 ~ 3773544 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 700838 2893418 ~ 2894947 (+)
G274270 NA other upstream 914568 2672624 ~ 2681158 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 1423533 2031954 ~ 2040427 (+)
G273359 NA other upstream 3116645 477727 ~ 479081 (+)
G274603 NA other downstream 202923 3800023 ~ 3803501 (+)
G274619 NA other downstream 532028 4129128 ~ 4133378 (+)
CI01000069_04556116_04558002 PYY, PYYA other downstream 958209 4555269 ~ 4558480 (+)
G274953 NA other downstream 1327367 4924467 ~ 4926687 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location