CI01000069_03643296_03647762 (SYT13, SYT5B, SYT5A)


Basic Information

Item Value
gene id CI01000069_03643296_03647762
gene name SYT13, SYT5B, SYT5A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3643155 ~ 3647786 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_03643296_03647762.mRNA
TTATAAAAAAAGAGGGATATTAAATGAATACTTTACAGGACACCAGACTGATCTAGGGGATATATGTGATTTGGGGCATTTAGTTCATGTAGGTTATTTCAGGATAGTGACAGTCTGTTTTATGTCTCTAGCTGATCAGCCATGCGATTGGTCAGTATGCAGCATCGTGGGCGGAGGGCAGCAGAATCAGAGGAGGAGCCTAATCCTGCTCCACCCCCTCCACCCCCTCCATCTCACCATTCCCACAACTTCATAAATATGAAGAATAAGTTCTTCAATGAGCTTGGCCATCTACCTATGCCCATGTGGGCTATTGGTGCCATAGTTGTGGTCGTGCTAGCCTTGGTTGGCTGCTTTGCTTTCTGTATCTATAAGAAGTGCTTGGGAGGGAAGAAGAAAGCAAAGAAAGTCAGAGAGCGGAAGGGTGGACGAAGAAGGATGAAAAAGGAGGGGGAGGAAGAAGCAGGCGAGGAGCAGCCTAAAGAGGGGGAAGGCGAGGGAGAGAAAGAATATTATGGCAAGTTGGAGTACACTCTGGACTATAACTTCACTGAAAATCAGCTCATTGTCGGTATCTTGCAAGCGCAAGACCTTCCTGCCATGGATCTGGGTGGAACGTCTGACCCCTATGTCAAAGTTTATATGCTACCAGACAAGAAGAAAAAGTTTGAAACAAAGGTCCAGCGCAAGAACCTGTGTCCTGTTTTCAACGAGACATTCATATTTAAGATCCCCTTCAATGATCTAGCAGGACAAACTCTGGTCCTGCAGGTGTTTGATTTTGACCGCTTTGGTAAACATGATGTAATTGGAGAGATAAAAATCCCCATGAACAGTATTGACCTGGGCCAGCCCATACACGAATATAAAGACCTGGTTGGAGGAGAGAAAGAGGAACAAGAAAAGCTTGGAGACATCTGCATCTCCCTGCGCTATGTGCCCACCTCCGGTAAACTGACCGTCTGTATCATGGAAGCCAAGAACCTGAAGAAGATGGACGTGGGTGGTTTATCAGATCCTTTTGTGAAAGTGGTTCTGCAACACAATGGAAAGCGCATCAAGAAGAAGAAGACGACAGTTAAGCAGAACACACTGAACCCTTACTTCAATGAAAGTTTCAGCTTTGAAATCCCCTTCGCTCAGATTCAGAAGATCCAGGTGTTGATCACCGTCTATGACTATGATAAACTGGGAAGCAATGATCCAATTGGGAAGTGCTGGATTGGGTTTGGTGCTAGTGGGGTGGGTCTGCGACACTGGTCAGACATGTTGGCCAATCCCAGACGACCTGTGGCCCAGTGGCACACACTACAGAATGAAGAGGAAGTAGATGCTGCCCTTAAAGCACCTATCCGCTAAATATCTTACTTATCCACCCCTCAA

Function

symbol description
syt5a Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and synaptic vesicle cycle. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon; plasma membrane; and secretory vesicle. Is expressed in epiphysis; midbrain; and retina. Orthologous to human SYT5 (synaptotagmin 5).
syt13 Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in several processes, including calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including axon; exocytic vesicle; and synapse. Is expressed in nervous system and trigeminal placode. Orthologous to human SYT13 (synaptotagmin 13).
syt5b Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and synaptic vesicle cycle. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon; plasma membrane; and secretory vesicle. Is expressed in diencephalon; epiphysis; retina; and telencephalon. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 7. Orthologous to several human genes including SYT2 (synaptotagmin 2).

NR:

description
Synaptotagmin V

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K15290 SYT1; synaptotagmin-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_03643296_03647762.mRNA True 1383 mRNA 0.46 8 3643155 3647786

Neighbor

gene id symbol gene type direction distance location
CI01000069_03636156_03639756 NA coding upstream 3170 3635980 ~ 3639985 (+)
CI01000069_03631837_03632897 NA coding upstream 10192 3631837 ~ 3632963 (+)
CI01000069_03625937_03626925 NA coding upstream 15994 3625937 ~ 3627161 (+)
CI01000069_03612923_03614657 NA coding upstream 28416 3612717 ~ 3614739 (+)
CI01000069_03595904_03596883 NA coding upstream 46055 3595726 ~ 3597100 (+)
CI01000069_03766564_03767936 NA coding downstream 118778 3766564 ~ 3768198 (+)
CI01000069_03812664_03832205 AP2A1 coding downstream 164878 3812664 ~ 3832279 (+)
CI01000069_03835903_03837843 NA coding downstream 188117 3835903 ~ 3838319 (+)
CI01000069_03839830_03843013 RRAS coding downstream 192044 3839830 ~ 3843569 (+)
CI01000069_03845642_03851052 PRRG2 coding downstream 197856 3845642 ~ 3851213 (+)
G274564 NA non-coding upstream 186945 3452564 ~ 3456210 (+)
G274592 NA non-coding upstream 220651 3420898 ~ 3422504 (+)
G274589 NA non-coding upstream 230385 3412500 ~ 3412770 (+)
G274588 NA non-coding upstream 230683 3412228 ~ 3412472 (+)
CI01000069_03375220_03376645 LY6E non-coding upstream 266348 3375008 ~ 3376807 (+)
G274601 NA non-coding downstream 10444 3658230 ~ 3658435 (+)
G274651 NA non-coding downstream 81096 3728882 ~ 3731583 (+)
G274715 NA non-coding downstream 89479 3737265 ~ 3737533 (+)
G274716 NA non-coding downstream 113115 3760901 ~ 3761638 (+)
G274721 NA non-coding downstream 125308 3773094 ~ 3773544 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 748267 2893418 ~ 2894947 (+)
G274270 NA other upstream 961997 2672624 ~ 2681158 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 1470962 2031954 ~ 2040427 (+)
G273359 NA other upstream 3164074 477727 ~ 479081 (+)
G274603 NA other downstream 152237 3800023 ~ 3803501 (+)
G274619 NA other downstream 481342 4129128 ~ 4133378 (+)
CI01000069_04556116_04558002 PYY, PYYA other downstream 907523 4555269 ~ 4558480 (+)
G274953 NA other downstream 1276681 4924467 ~ 4926687 (+)
CI01000069_05046565_05048523 NA other downstream 1398441 5045967 ~ 5049408 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025472 syt5a coding NC_007114.7 CM002887.2 32142382 ~ 32151167 (+)