CI01000069_03845642_03851052 (PRRG2)


Basic Information

Item Value
gene id CI01000069_03845642_03851052
gene name PRRG2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3845642 ~ 3851213 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_03845642_03851052.mRNA
GTACAATGCTGGGGTTTCCAGCGATATTTTTCAGTTTGCTATCCCTGCTGCATCTTGTTTGGGGCAGAGTGATCTACAATGGAAATGATGTGTTCCTAGAAGAGAAGTCAGCAGGTTCATTTCTGTCCCGTAAACTGTTGTATAACAGTTGGGATTTTGAGTTAGTGACGCCTGGCAATATAGAGAGAGAATGTAATGAGGAAATATGCTCATATGAAGAGGCCAGAGAGGTGTTTGAAGATGACAAATTGACAGCCAATTTTTGGAAAGACTATGTCAGCAGTCATGAGACTTTGCCTCGAATTGATGTGTCTGGTTTGGTAGCTGGCATCGTGGCTATTGTAATAACAGCGATTATAGCCATTGTGCTGGGCCTTTATTGCTACAAGAACAGAGGCAAAAATGCAAGAGGGGGCAGTGTTCCTGTGCGTATGGGAGTGGATGGGCAGCCAATACCTGAATCTGTGCCCTTGTCTAATATCGTGGCTCCGGGTCTGCCCTCGTACAACGAGGCTCTGACTCGCAGTGGCCAGCATGATGCCCCCCCACCGCCGTACTCTGGGGTCTCAGCGCGCACCTCCATAGACCCTATAAGTGAGAGCGTAGGAAACTCAGTAGTGCCTCAGTGCTGTAACAAGGCGGCAGTACGCACGAGACTTCCAGACAGACTGCGTATGTGTGAGTGTGACAAGCGAGTCGGAAATTATCCTGGCACAGGATTCGGTGATCTGGGCGCTGGAACGGGATGGAGTTACGAGAGATCGGCGAAGGCAAGAGAAATTACAGCGTGACCGACCGAGACGTGCACACTGTAAACATAAACGTAAGACGCACTGCAAACGTATTTGCAGCTATAAAGGTTTTACAAACAGAATGTGTGACTTAAACTTAATGTATGAGATATATATGTATTTAAATATCCATAGCAAAGCGGACTGGAGGAAACTGTTGA

Function

symbol description
prrg2 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Orthologous to human PRRG2 (proline rich and Gla domain 2).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_03845642_03851052.mRNA True 952 mRNA 0.47 8 3845642 3851213

Neighbor

gene id symbol gene type direction distance location
CI01000069_03839830_03843013 RRAS coding upstream 2073 3839830 ~ 3843569 (+)
CI01000069_03835903_03837843 NA coding upstream 7323 3835903 ~ 3838319 (+)
CI01000069_03812664_03832205 AP2A1 coding upstream 13363 3812664 ~ 3832279 (+)
CI01000069_03766564_03767936 NA coding upstream 77444 3766564 ~ 3768198 (+)
CI01000069_03643296_03647762 SYT13, SYT5B, SYT5A coding upstream 197856 3643155 ~ 3647786 (+)
CI01000069_03854857_03870627 PRR12, PRR12B coding downstream 3644 3854857 ~ 3870933 (+)
CI01000069_03886826_03898833 SCAF1 coding downstream 35613 3886826 ~ 3899025 (+)
CI01000069_03902139_03920099 TRPM4A coding downstream 50926 3902139 ~ 3920299 (+)
CI01000069_03927870_03929948 NA coding downstream 76657 3927870 ~ 3930379 (+)
CI01000069_03935114_03939004 NOSIP coding downstream 83095 3934308 ~ 3939158 (+)
G274733 NA non-coding upstream 38583 3804616 ~ 3807059 (+)
G274731 NA non-coding upstream 47767 3797568 ~ 3797875 (+)
G274628 NA non-coding upstream 48670 3791506 ~ 3796972 (+)
G274721 NA non-coding upstream 72098 3773094 ~ 3773544 (+)
G274716 NA non-coding upstream 84004 3760901 ~ 3761638 (+)
G274737 NA non-coding downstream 22563 3873776 ~ 3873980 (+)
G274743 NA non-coding downstream 32324 3883537 ~ 3883757 (+)
G274746 NA non-coding downstream 71075 3922288 ~ 3922571 (+)
G274748 NA non-coding downstream 80855 3932068 ~ 3932404 (+)
G274760 NA non-coding downstream 147770 3998983 ~ 4002223 (+)
G274603 NA other upstream 42141 3800023 ~ 3803501 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 950754 2893418 ~ 2894947 (+)
G274270 NA other upstream 1164484 2672624 ~ 2681158 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 1673449 2031954 ~ 2040427 (+)
G274619 NA other downstream 277915 4129128 ~ 4133378 (+)
CI01000069_04556116_04558002 PYY, PYYA other downstream 704096 4555269 ~ 4558480 (+)
G274953 NA other downstream 1073254 4924467 ~ 4926687 (+)
CI01000069_05046565_05048523 NA other downstream 1195014 5045967 ~ 5049408 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location