XLOC_026478 (prmt1)


Basic Information

Item Value
gene id XLOC_026478
gene name prmt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32356833 ~ 32363021 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051599
AAATCATACAGTCACAGCAAAGAGGCGGGAGCAAAACAAGTGTGTTTTACATGAGCTTTGCTGCAGTCGCGGCTGTGTCCAGTTTATCGAAATGGCGGAGACGGCAGACAGAATGGAGGTGTCCCAGGGAGAGAGCTCAGCGAAACCTGCAGCTGAAGACATGACGTCCAAAGACTATTACTTTGATTCCTATGCACACTTTGGCATTCATGAGGAGATGCTAAAAGATGAAGTTCGTACTTTGACGTACAGAAACTCCATGTTTCACAACAAGCATCTCTTCAAAGATAAAGTTGTGCTGGATGTGGGAAGTGGTACTGGCATCCTCTGTATGTTTGCAGCCAAAGCTGGAGCCAAGAAAGTTATTGGGATTGAGTGCAGCAGTATATCAGACTATGCTGTGAAGATTGTGAAGGCCAACAAGCTGGATCATATCGTCACTATAATTAAGGGCAAAGTGGAGGAGGTCGAGCTTCCTGTGGAAAATGTAGACATAATCATCTCTGAGTGGATGGGCTACTGTCTCTTCTATGAATCCATGCTTAACACCGTCATTTATGCCAGGGACAAATGGCTGAAACCTGATGGCCTGATTTTTCCTGACAGAGCCACCCTCTATGTCACTGCTATCGAGGATCGGCAGTACAAGGATTACAAAATCCACTGGTGGGAGAACGTGTATGGATTTGACATGTCCTGTATTAAGGAAGTGGCCATTACAGAGCCGCTGGTGGATGTTGTTGATCCCAAACAGCTTGTTAGCACTGCTTGCTTAATTAAGGAGGTGGACATCTACACCGTGAAGATTGAGGACCTGTCCTTCACGTCACCTTTCTGCCTGCAGGTGAAAAGAAACGACTACATTCATGCTCTGGTAACCTACTTCAACATAGAGTTCACTCGCTGCCACAAGAGGACAGGCTTCTCTACCAGCCCAGAGTCTCCTTACACTCACTGGAAGCAGACTGTGTTCTACCTTGATGACTATCTGACAGTAAAGACTGGAGAGGAGATCTTTGGCACTATCAGCATGAAGCCCAACGTCAAGAATAATAGAGACCTGGACTTTACTGTCGACATTGACTTCAAGGGTCAACTTTGTGAGGTGTCCAAGACATCAGAGTACAGAATGCGCTAGTTTCCATTAGCATCAGTGCACATGTGTGGAGCAAATCAAGAGAGCAGTGTATGCCTGTGTGTTAAACCATGACCCTTTGTTCCATGACTGCGCAGTTTTAGAGATCTTGTTTTGCAGAATGTTGTCTGACATGGAGGATTTAGAATTGTTTTGTAAGTGAACTCTTGATTTTGTGTAAAATGCGCACGAGAGGACTAAACATGGCAGATTTTACCGTGTTTTTTCCATCTTGTGTGTTAAACCTTTTTGGCCCTGCCTTTTTCAAAGTTTAGATGCACCATCTGGGAAAGGATTCCTTGAgttcatacacacatgcacacacttgcGCCTGCTCTTTGCCCTCTGTCTGCATCTGAGACATGTCattcatgtatgttttttttttttcccctgccATGCCAGCATGTCTTTGTTGGTGACAAAAAAATGCTAATCAGCCATATCTTTTGATAATCCATCTGGTAATGCCAGCATTTTTCATGTAGGTAAAACCTGTTGTCATGTTTGACTGTGGACTGAAACTCTGCCCTGTTACTTGCcgaattattgttttattttttttctgtctgtacTGGAAGGCAGTTGTCTTGGACCATCACTAGAGGGCGCCTCCATAACATGCCATTAGTCTGAGGAGTAACCATTTTAATTTCCATTGTGCTCCTATgtccatgctttttttttaagtgcttgTGGCAATGACCCAGTCAGAGGATAATATTGTGTCATTTGAGATGGTGCAATAATCTCCTGTACAACTCATAGATGGTGTTAATAAGCACTCTTGTAGATCTTTTGGTCTTTTTAAATCTCATGTAGGACAAATGTTCATCTGATGACTGTTTAGTTTAAGCTTATCTGCTGCTCTTTTGCACTGTAAGCACTTAACTAAGTTTCTCAGACCCAGAACTACAATATTATAATTCCACTGAAGGAAACCTTCAGCCTAAATTTTCCATAGAAATGCTTTTATTGAAAGATGATGCATTTCCTGTGTTTGGGTAACTTCACGTTTGTTGATCTTCTCTGTGTTGCTGTGTACTACAGTGTTTTTGTGGAGGGATGCAAGTTTGTGTCTGATGTCTAGCACTGGTGTGGATTGTTATCAGGCAGACATTTGTCTAGGAAgtgtattattttcttttctttttttgaaataaaaacattaaacctCA
>TCONS_00051600
AAAAACGCTTCTGATGCTAAATATCTCGTAACCGTATCAGAATCGACACGGCGATTTTATTTACGTCACACGCCGGTTCCGAATCTTTGGTCTGTGAACAGATTTGATTGCTGCGTATGTAGTTATCAGGTGTCCCAGGGAGAGAGCTCAGCGAAACCTGCAGCTGAAGACATGACGTCCAAAGACTATTACTTTGATTCCTATGCACACTTTGGCATTCATGAGGAGATGCTAAAAGATGAAGTTCGTACTTTGACGTACAGAAACTCCATGTTTCACAACAAGCATCTCTTCAAAGATAAAGTTGTGCTGGATGTGGGAAGTGGTACTGGCATCCTCTGTATGTTTGCAGCCAAAGCTGGAGCCAAGAAAGTTATTGGGATTGAGTGCAGCAGTATATCAGACTATGCTGTGAAGATTGTGAAGGCCAACAAGCTGGATCATATCGTCACTATAATTAAGGGCAAAGTGGAGGAGGTCGAGCTTCCTGTGGAAAATGTAGACATAATCATCTCTGAGTGGATGGGCTACTGTCTCTTCTATGAATCCATGCTTAACACCGTCATTTATGCCAGGGACAAATGGCTGAAACCTGATGGCCTGATTTTTCCTGACAGAGCCACCCTCTATGTCACTGCTATCGAGGATCGGCAGTACAAGGATTACAAAATCCACTGGTGGGAGAACGTGTATGGATTTGACATGTCCTGTATTAAGGAAGTGGCCATTACAGAGCCGCTGGTGGATGT

Function

symbol description
prmt1 Enables arginine N-methyltransferase activity. Acts upstream of or within convergent extension involved in gastrulation and histone H4-R3 methylation. Predicted to be active in nucleus. Is expressed in several structures, including adaxial cell; brain; heart; otic vesicle; and pleuroperitoneal region. Orthologous to human PRMT1 (protein arginine methyltransferase 1).

GO:

id name namespace
GO:0018216 peptidyl-arginine methylation biological_process
GO:0043985 histone H4-R3 methylation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0016273 arginine N-methyltransferase activity molecular_function
GO:0016274 protein-arginine N-methyltransferase activity molecular_function

KEGG:

id description
ko04068 FoxO signaling pathway
ko04922 Glucagon signaling pathway
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-693 Enables arginine N-methyltransferase activity. Acts upstream of or within convergent extension involved in gastrulation and histone H4-R3 methylation. Predicted to be active in nucleus. Is expressed in several structures, including adaxial cell; brain; heart; otic vesicle; and pleuroperitoneal region. Orthologous to human PRMT1 (protein arginine methyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000010246

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051599 False 2313 mRNA 0.42 10 32356833 32363021
TCONS_00051600 True 749 mRNA 0.45 7 32360511 32362872

Neighbor

gene id symbol gene type direction distance location
XLOC_026477 NA coding downstream 19138 32325134 ~ 32337695 (-)
XLOC_026476 si:dkey-16p21.7 coding downstream 36290 32294745 ~ 32320543 (-)
XLOC_026475 cpt1cb coding downstream 66737 32228901 ~ 32290096 (-)
XLOC_026474 NA coding downstream 134748 32185899 ~ 32222085 (-)
XLOC_026473 pih1d1 coding downstream 176000 32172534 ~ 32180833 (-)
XLOC_026479 si:ch211-195b15.7 coding upstream 95699 32458720 ~ 32472155 (-)
XLOC_026480 rcn3 coding upstream 172965 32535986 ~ 32541072 (-)
XLOC_026481 NA coding upstream 202173 32565194 ~ 32572052 (-)
XLOC_026482 tspan4b coding upstream 223989 32587010 ~ 32596394 (-)
XLOC_026483 NA coding upstream 235623 32598644 ~ 32603191 (-)
XLOC_026469 NA non-coding downstream 399467 31935697 ~ 31957366 (-)
XLOC_026460 NA non-coding downstream 706122 31650253 ~ 31650711 (-)
XLOC_026457 NA non-coding downstream 756551 31511470 ~ 31600282 (-)
XLOC_026499 NA non-coding upstream 937173 33300194 ~ 33304123 (-)
XLOC_026500 CABZ01012959.1 non-coding upstream 981055 33344076 ~ 33345247 (-)
XLOC_026505 CR396582.3 non-coding upstream 1061171 33424192 ~ 33424328 (-)

Expression


Co-expression Network