XLOC_026514 (ighd)


Basic Information

Item Value
gene id XLOC_026514
gene name ighd
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33949246 ~ 33961589 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051679
gtCACTAAGCCCAGAATAGCTCTGCTGAGTAGAGAGGATGGTGATAGAATCATGTTGGAGTGCCACTTGAAAGATTACTATCCAGAGGAATTTAGTGTACAATGGCTTTATAATGGTCAGCCTGTCAGCGGTACAAACAGAATGCTGCAGAACAAAGAAGTGGAGAAAACTTTTACCTACATAAGTCAACTGAATATTAGTTATTCACATGATTACAAGAATTACACTTGTTATGCCAACCACAACTCTAAGGTATACCAGCAAGACTATAACAGGTGCACTGAAGACGTAAAGAAGGATCCTGAAGTGGAGATCAGGAGGTCTTTCATGAAATCATCAGCACCAGTAAGTGATGCTGTGCTGGAGTGTGTTGTGGGTGATCTTTCTCCTGGCGAGGTCTGCATCACTTTCCAGGCTAATAATGTTGATATCTCAGATCTCGATTGTGTGGATTCAGCCCCTTCTAATAACAGTTGGTCCTTGATTAGAAATTTTACAATACCCAGTTCAAATCAGACGACAGAAAATAACTTTACCTGTAAAGTTCATAGTGCCTTTAAAGAATGGACATCAAAACCTACTGGACACATTTTTGATAATGCTTCCTCGGAGCTTGTTGTTGGTCCTAAAGTGGTTCAGTCTAGTTCAGAGTACCAAAAGCTGCTGTGCTCTGCTACAGGGTTTTATCCCAAGATAGAGTGGCTTCCACAATCTAGTGTAAAAGCTAGCAACTCAACCATCACCCTGATGCAAGATGGCCACGTGAAAGTGTACAGTGAGATATTAGTGCCCCAGGATGAGTGGAATAAAGGAGTCAATTTCACCTGCCTAGTTACAGATGGGACcaataaagaaactgttgagaAAAACACCAGTATTTGTTCAGCACATTGTTTCATCAAACCTTCAATCCAAATAAAGACAAACCCTCTCAGAGACATTATAAAAACGGGCAATGTCACATTGTCATGTGTTGTTAAAGCTCCAGACATCACTATAGTGTCATGGTTGGTAGATGGTCAAAGTGAACCAACCACCACACCACACAAAGATCTCTCCAATAACACTGTGAGCTACTTGACTGTGAGCACAAAGGATTGGTTGAAGAAAACCATTGTTTGTATTGCTCAACATCCTTGTTTCTCAAACGAGAGTCGTGAAAATCAGGCTGAAGACGTAAAGAAGGATCCTGAAGTGGAGATCAGGAGGTCTTTCATGAAATCATCAGCACCAGTAAGTGATGCTGTGCTGGAGTGTGTTGTGGGTGATCTTTCTCCTGGCGAGGTCTGCATCACTTTCCAGGCTAATAATGTTGATATCTCAGATCTCGATTGTGTGGATTCAGCCCCTTCTAATAACAGTTGGTCCTTGATTAGAAATTTTACAATACCCAGTTCAAATCAGACGACAGAAAATAACTTTACCTGTAAAGTTCATCGTGCCTTTAAAGAATGGACATCAAAACCTACTGGACACATTTTTGATAATGCTTCCTCAGAGCTTGTTGTTGGTCCTAAAGTGGTTCAGTCTAGTTCAGAGTACCAGAAGCTGCTGTGCTCTGCTACAGGGTTTTATCCCAAGATACAGTGGCTTCCACAATCTAGTGTAAAAGCTAGCAACTCAACCGTCACCCTGATGCAAGATGGCCACGTGAAAGTGTACAGTGAGATATTAGTGCCCCAGGATGAGTGGAATAAAGGAGTCAATTACACCTGCCTAGTTACAGATGGGACcaataaagaaactgttgagaAAAACACCAGTATTTGTTCAGCACATTGTTTCATCAAACCTTCAATCCAAATAAAGACAAACCCTCTCAGAGACATTATAAAAACGGGCAATGTCACATTGTCATGTGTTGTTAAAGCTCCAGACATCACTATAGTGTCATGGTTGGTAGATGGTCAAAGTGAACCAACCACCACACCACACAAAGATCTCTCCAATAACACTGTGAGCTACTTGACTGTGAGCACAAAGGATTGGTTAAAGAAAACCATTGTTTGTTTTGCTCAACATCCTTGTTTCTCAAACGAGAGTCGTGAAAATCAGGCTGAAGACGTAAAGAAGGATCCTGAAGTGGAGATCAGGAGGTCTTTCATGAAATCATCAGCACCAGTAAGTGATGCTGTGCTGGAGTGTGTTGTGGGTGATCTTTCTCCTGGCGAGGTCTGCATCACTTTCCAGGCTAATAATGTTGATATCTCAGATCTCGATTGTGTGGATTCAGCCCCTTCTAATAACAGTTGGTCCTTGATTAGAAATTTTACAATACCCAGTTCAAATCAGACGACAGAAAATAACTTTACCTGTAAAGTTCATCGTGCCTTTAAAGAATGGACATCAAAACCTACTGGACACATTTTTGATAATGCTTCCTCAGAGCTTGTTGTTGGTCCTAAAGTGGTTCAGTCTAGTTCAGAGTACCAGAAGCTGCTGTGCTCTGCTACAGGGTTTTATCCCAAGATACAGTGGCTTCCACAATCTAGTGTAAAAGCTAGCAACTCAACCGTCACCCTGATGCAAGATGGCCACGTGAAAGTGTACAGTGAGATATTAGTGCCCCAGGATGAGTGGAATAAAGGAGTCAATTACACCTGCCTAGTTACAGATGGGACcaataaagaaactgttgagaAAAACACCAGTATTTGTTCAGCACATTGTTTGATCAAACCTTCAATCCAAATAAAGACAAACCCTCTCAAAGACATTATAAAAACGGGCAATGTCACATTGTCATGTGTTGTTAAAGCTCCAGAGTACACTGTAGTGTCATGGTTGGTAGATGGTCAAAGTGAACCAACCACCACACCACACAAAGATCTCTCCAATAACACTGTGAGCTACTTGACTGTGAGCACAAAGGATTGGTTAAAGAAAACCATTGTTTGTTTTGCTCAACATCCTTGTTTCTCAAACGAGAGTCATGAAAATCAGGCTGAAAACGTAAAGAAGGATCCTGAAGTGGAGATCAGGAGGTCTTTCATGAAATCATCAGCACCAGTAGGTGGTGCTGTGCTGGAGTGTGTTGTGGGTGATCTTTCTCCTGGTGAGGTCTGCATCACTTTCCAGGCTAATAATGTTGATATCTCAGATCTCGATTGTGTGGATTCAGCCCCTTCTAATAACAGTTGGTCCTTGATTAGAAATTTTACAATACCCAGTTCAAATCAGACGACAGAAAATAACTTTACCTGTAAAGTTCATAGTGCCTTTAAAGAATGGACATCAAAACCTACTGGACACATTTTTGATAATGCTTCCTCAGAGCTTGTTGTTGGTCCTAAAGTGGTTCAGTCTAGTTCAGAGTACCAGAAGCTGCTGTGCTCTGCTACAGGGTTTTATCCCAAGATACAGTGGCTTCCACAATCTAGTGTAAAAGCTAGCAACTCAACCGTCACCCTGATGCAAGATGGCCACGTGAAAGTGTACAGTGAGATATTAGTGCCCCAGGATGAGTGGAATAAAGGAGTCAATTACACCTGCCTAGTTACAGATGGGACCAATAGAGAACCTGTTGAGAAAAACACCAGTATTTGTTCAGTCATTGCACCATCCAGTCAGCAGGCAGACGTCTTCTTGCTGGGTCCTCCCctcagttttgcaagctctgacTTAAATTTGACCTGTATAGTTATTGGTCAGAATGTTGAGTATTTCATCTTTCAGTGGAAAGTGAATGGAAATAATAGTGATGGTATTGATCAAGCTCCAGTACAGCATCTTAACGGGACTCAAAGCAAAGTAAATCTATTGAAAGTTTCAGTTAATACATGGAATTCACATGCCCTCATCACCTGCGAGGTCAAGCATTTGTGCTCCGTAGACACACAAAAGCAGAGAATCTTAAAAACCAGAGACCCAAAACAGCCCACTGTGAGAATCCTCAGACCCTCAGACAGTGATCTCTCTGGAGGCAAAATTTCCAGCCTTGTTTGCTTTATCAGTGATTTCTTCCCTTCTGATATCTTAGTAGAGTGGAAGCTAAATGGAAAGCAGCTTAGCAGGTCTCAGTTTTCTAACAGCCCTCTGGTTGCACTCTCTTCAGGAGGTTTTTCAATGCATAGTGCTCTAATTTTACCTGGAGAGCAGCAAAAGGATGGCATCTACTCTTGTGAAGTTTCTCATGAGTCTTCCCAAAAACCAATCAATGCCACTTTGGAGAACTTGTATGcatCCTTGCACCATTCTGCTCCATCTGCAGAGCTGCTACAGGGTGCTGATGGGCTAATGTGTCTGGTGTCGGGTTTTAGTCCATCTTCCATCAATATAACTTGGTTTATGGGAATGACTGAAATGTCTGAGCAGAACAAGACCAAACTTGCAAAATACCCTGATGGAAAATTTCTAATCCAAAGTCACCTGCCTCTCAAGCCTTCAGATTGGGCTCCTGGTGAGGTGTACACATGCAGGGTCACTCATGTTACTGGCACTCAGTGGTTTAACATCTCGAAAAATTCAGTAATTTCCGAAGAGGCTATATTTATGAATGAAATTAAACCTGAATTTATTCCTCAAGATACCGTTGGAGAGGTCTGGAATATGGCTTGTGCCTTTCTCATCCTTTTCCTTCTCGCTCTTGTCTATGGATGCACAGTCACTTTGGTCAAAGTGAAGTCTGAATGAGCAAcattttatgtgtgtatgtgtatatgtgtgtgtttcctgaatacactttaaaactttttttcttttgaaaatatggtaaaaatgtCTTActagttattaattaaatattttatactaaCATGGACTAACAATGTATTCGTATAACAGGGAATTTCTAATGTTTTTGTCTGGAATTTTTCTCCTATTCAaagaggctatttattataaattatattattatgaatatatattgcACAAGATAAAGTTGGAGAGGTCTGGAATATGTGTCCTGATCATTCTACAAACTGAAGCCaaatttttatgtgtgtgttttaaattattttgctttttgttcaaCATTTGATAGCTTCGCAAATGTTAAATGGTAAGTATTAATTTTTGATCTTTTGATCTTGTGAAcatttattctctctctctctctctctctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatataaatctgttcTAACACTTTGTACTGTTTAACAATATACTATACTAACAATGTCTAACTGTGtatacatatttgtttatttttccagaAAGATTCTCATATGTTTAGGATCATTCTGTAACCATTCTATCATGAAATGTGTCATTCTGATAACTCTGTGTTGacattaga

Function

symbol description
ighd Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Acts upstream of or within response to lipopolysaccharide. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0032496 response to lipopolysaccharide biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040513-9 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Acts upstream of or within response to lipopolysaccharide. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000096248

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051679 True 5297 mRNA 0.40 16 33949246 33961589

Neighbor

gene id symbol gene type direction distance location
XLOC_026513 BX510335.1 coding downstream 458 33948669 ~ 33948788 (-)
XLOC_026512 gtf2f1 coding downstream 7371 33921971 ~ 33941875 (-)
XLOC_026511 NA coding downstream 30051 33918566 ~ 33919195 (-)
XLOC_026510 cacna1aa coding downstream 47763 33773156 ~ 33901483 (-)
XLOC_026509 CU695077.1 coding downstream 258492 33681518 ~ 33690754 (-)
XLOC_026515 ighv1-4 coding upstream 1658 33963247 ~ 34095221 (-)
XLOC_026516 ighj2-5 coding upstream 8549 33970138 ~ 33970190 (-)
XLOC_026517 ighj2-3 coding upstream 9092 33970681 ~ 33970734 (-)
XLOC_026518 ighj2-2 coding upstream 9359 33970948 ~ 33970998 (-)
XLOC_026519 BX510335.5 coding upstream 14337 33975926 ~ 33975939 (-)
XLOC_026505 CR396582.3 non-coding downstream 524918 33424192 ~ 33424328 (-)
XLOC_026500 CABZ01012959.1 non-coding downstream 603999 33344076 ~ 33345247 (-)
XLOC_026529 BX649502.7 non-coding upstream 61576 34023165 ~ 34023613 (-)
XLOC_026534 BX649502.8 non-coding upstream 73603 34035192 ~ 34035631 (-)
XLOC_026538 BX649502.6 non-coding upstream 85590 34047179 ~ 34047616 (-)
XLOC_026539 BX649502.4 non-coding upstream 86616 34048205 ~ 34048653 (-)
XLOC_026544 BX649502.10 non-coding upstream 97090 34058679 ~ 34058717 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnar-ucg_2 NA coding NC_053118.1 CM020915.1 17855 ~ 17927 (-)
tiger barb (Puntius tetrazona) LOC122331923 NA coding NC_056701.1 CM032070.1 12981087 ~ 12987204 (-)