XLOC_026539 (BX649502.4)


Basic Information

Item Value
gene id XLOC_026539
gene name BX649502.4
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34048205 ~ 34048653 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051716
ATGTTCCCTGCAGCTTTAATTTGGCTTTTTTCAGTGATGGCCTGTATGGAATGTAATATCATCCTCACTCAGCCAAACTCTATAATTCTGCAGCCGGGTAACTCACTTACTCTCACATGTGAGGTGTCTGGATATTCTGTAACAGATGACAATTACGCAACAGCCTGGATACGACAACCTGCAGGAAAAGCTCTGGAGTGGATTGTGCACATATGGGGAGGTGGAGGCATAACTAAGAAAGACTTACTGGCAAACAAGTTCAGCATCTGCAAAAGTGACTCCAGCAACAGAGTGACTCTTCAAGGACAGAGTTAAAAGACTGAAGACACAGCTGCGTATTACTGTGCAAGACTAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092437

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051716 True 355 IG_V_pseudogene 0.44 2 34048205 34048653

Neighbor

gene id symbol gene type direction distance location
XLOC_026538 BX649502.6 coding downstream 589 34047179 ~ 34047616 (-)
XLOC_026535 ighv9-4 coding downstream 6177 34036619 ~ 34042028 (-)
XLOC_026537 ighv8-4 coding downstream 8142 34039630 ~ 34040063 (-)
XLOC_026536 ighv9-3 coding downstream 8963 34038753 ~ 34039242 (-)
XLOC_026534 BX649502.8 coding downstream 12574 34035192 ~ 34035631 (-)
XLOC_026540 ighv3-2 coding upstream 2269 34050922 ~ 34056168 (-)
XLOC_026541 ighv11-1 coding upstream 3742 34052395 ~ 34052882 (-)
XLOC_026542 ighv1-2 coding upstream 4970 34053623 ~ 34054081 (-)
XLOC_026543 ighv2-2 coding upstream 6616 34055269 ~ 34055745 (-)
XLOC_026544 BX649502.10 coding upstream 10026 34058679 ~ 34058717 (-)
XLOC_026529 BX649502.7 non-coding downstream 24592 34023165 ~ 34023613 (-)
XLOC_026513 BX510335.1 non-coding downstream 99417 33948669 ~ 33948788 (-)
XLOC_026511 NA non-coding downstream 129010 33918566 ~ 33919195 (-)
XLOC_026547 BX649502.5 non-coding upstream 15302 34063955 ~ 34064936 (-)
XLOC_026558 BX649502.11 non-coding upstream 37388 34086041 ~ 34086483 (-)
XLOC_026572 NA non-coding upstream 90984 34139637 ~ 34141181 (-)
XLOC_026580 NA non-coding upstream 592395 34641048 ~ 34641973 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) LOC117598897 NA misc NC_047607.1 CM018553.1 22244064 ~ 22244586 (-)
tiger barb (Puntius tetrazona) G19700 NA unknown NC_056701.1 CM032070.1 13047041 ~ 13047494 (-)
mexican tetra (Astyanax mexicanus) G21754 NA non-coding NC_035899.1 CM008302.1 25924982 ~ 25925186 (-)