RNA id: TCONS_00051716


Basic Information

Item Value
RNA id TCONS_00051716
length 355
RNA type IG_V_pseudogene
GC content 0.44
exon number 2
gene id XLOC_026539
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34048205 ~ 34048653 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTCCCTGCAGCTTTAATTTGGCTTTTTTCAGTGATGGCCTGTATGGAATGTAATATCATCCTCACTCAGCCAAACTCTATAATTCTGCAGCCGGGTAACTCACTTACTCTCACATGTGAGGTGTCTGGATATTCTGTAACAGATGACAATTACGCAACAGCCTGGATACGACAACCTGCAGGAAAAGCTCTGGAGTGGATTGTGCACATATGGGGAGGTGGAGGCATAACTAAGAAAGACTTACTGGCAAACAAGTTCAGCATCTGCAAAAGTGACTCCAGCAACAGAGTGACTCTTCAAGGACAGAGTTAAAAGACTGAAGACACAGCTGCGTATTACTGTGCAAGACTAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000142616

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051677 lncRNA downstream 109384 33936453 ~ 33938821 (-) True XLOC_026512
TCONS_00051675 lncRNA downstream 112767 33922620 ~ 33935438 (-) False XLOC_026512
TCONS_00053065 lncRNA downstream 129010 33918566 ~ 33919195 (-) True XLOC_026511
TCONS_00051667 lncRNA downstream 357451 33681518 ~ 33690754 (-) True XLOC_026509
TCONS_00051659 lncRNA downstream 610473 33435754 ~ 33437732 (-) True XLOC_026506
TCONS_00053066 lncRNA upstream 90984 34139637 ~ 34141181 (-) True XLOC_026572
TCONS_00051762 lncRNA upstream 131154 34179807 ~ 34180432 (-) False XLOC_026573
TCONS_00051763 lncRNA upstream 131154 34179807 ~ 34180451 (-) True XLOC_026573
TCONS_00051771 lncRNA upstream 421501 34470154 ~ 34477363 (-) False XLOC_026575
TCONS_00051773 lncRNA upstream 477289 34525942 ~ 34546406 (-) False XLOC_026575
TCONS_00051710 mRNA downstream 6177 34036619 ~ 34042028 (-) False XLOC_026535
TCONS_00051709 mRNA downstream 6327 34036619 ~ 34041878 (-) False XLOC_026535
TCONS_00051714 mRNA downstream 8142 34039630 ~ 34040063 (-) True XLOC_026537
TCONS_00051713 mRNA downstream 8963 34038753 ~ 34039242 (-) True XLOC_026536
TCONS_00051711 mRNA downstream 11141 34036627 ~ 34037064 (-) False XLOC_026535
TCONS_00051717 mRNA upstream 2269 34050922 ~ 34056168 (-) False XLOC_026540
TCONS_00051718 mRNA upstream 2277 34050930 ~ 34051363 (-) True XLOC_026540
TCONS_00051719 mRNA upstream 3742 34052395 ~ 34052882 (-) True XLOC_026541
TCONS_00051720 mRNA upstream 4970 34053623 ~ 34054081 (-) True XLOC_026542
TCONS_00051721 mRNA upstream 6616 34055269 ~ 34055745 (-) True XLOC_026543
TCONS_00051715 other downstream 589 34047179 ~ 34047616 (-) True XLOC_026538
TCONS_00051712 other downstream 10324 34037481 ~ 34037881 (-) True XLOC_026535
TCONS_00051708 other downstream 12574 34035192 ~ 34035631 (-) True XLOC_026534
TCONS_00051702 other downstream 24592 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051678 other downstream 99417 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051722 other upstream 10026 34058679 ~ 34058717 (-) True XLOC_026544
TCONS_00051725 other upstream 15302 34063955 ~ 34064936 (-) True XLOC_026547
TCONS_00051740 other upstream 37388 34086041 ~ 34086483 (-) True XLOC_026558
TCONS_00051752 other upstream 54304 34102957 ~ 34103365 (-) True XLOC_026563
TCONS_00051772 other upstream 477289 34525942 ~ 34546399 (-) False XLOC_026575

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) LOC117598897 True 434 V_segment 0.47 2 NC_047607.1 22244064 ~ 22244586 (-)
tiger barb (Puntius tetrazona) TU29371 True 360 TUCP 0.46 2 NC_056701.1 13047041 ~ 13047494 (-)
mexican tetra (Astyanax mexicanus) TU29371 True 205 lncRNA 0.44 1 NC_035899.1 25924982 ~ 25925186 (-)