XLOC_026543 (ighv2-2)


Basic Information

Item Value
gene id XLOC_026543
gene name ighv2-2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34055269 ~ 34055745 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051721
tggctactgCATCATATTCTTTATTTTGTAACATGAACATGAATATTTGCCATTTTCTCTGTGTGGTGATTGTCTTTCAAGGTATCAGTGGTGATGAAATTCGATTAGATCAGTCACCTTCTGTGACAAAGAGACCTGGAGAAACGGTGAAGATCTCCTGTAAAATATCTGGGTTTACAATGACACGCTACTACATGCACTGGATACGGCAGAAGCCTGGAAAAGCTCTGGAGTGGATTGGGAGAGTTAACTCTGGCTCTGGTAGTGCTGATTATGCAGATTCCATGAAAAACCAATTCACTCTGAGTGAGGACGTGTCTCAAAATATGCAATATCTTGAAGCCAAGAGTCTGAGAGAAGAGGACACTGCTGTTTATTACTGTGCTCGGGAGT

Function

symbol description
ighv2-2 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030924-5 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000096424

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051721 True 393 mRNA 0.42 2 34055269 34055745

Neighbor

gene id symbol gene type direction distance location
XLOC_026542 ighv1-2 coding downstream 1188 34053623 ~ 34054081 (-)
XLOC_026541 ighv11-1 coding downstream 2387 34052395 ~ 34052882 (-)
XLOC_026539 BX649502.4 coding downstream 6616 34048205 ~ 34048653 (-)
XLOC_026538 BX649502.6 coding downstream 7653 34047179 ~ 34047616 (-)
XLOC_026535 ighv9-4 coding downstream 13241 34036619 ~ 34042028 (-)
XLOC_026544 BX649502.10 coding upstream 2934 34058679 ~ 34058717 (-)
XLOC_026545 ighv1-1 coding upstream 3952 34059697 ~ 34060153 (-)
XLOC_026546 ighv2-1 coding upstream 5655 34061400 ~ 34061892 (-)
XLOC_026547 BX649502.5 coding upstream 8210 34063955 ~ 34064936 (-)
XLOC_026548 ighv9-2 coding upstream 10368 34066113 ~ 34066548 (-)
XLOC_026534 BX649502.8 non-coding downstream 19638 34035192 ~ 34035631 (-)
XLOC_026529 BX649502.7 non-coding downstream 31656 34023165 ~ 34023613 (-)
XLOC_026513 BX510335.1 non-coding downstream 106481 33948669 ~ 33948788 (-)
XLOC_026558 BX649502.11 non-coding upstream 30296 34086041 ~ 34086483 (-)
XLOC_026572 NA non-coding upstream 83892 34139637 ~ 34141181 (-)
XLOC_026580 NA non-coding upstream 585303 34641048 ~ 34641973 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location