XLOC_026535 (ighv9-4)


Basic Information

Item Value
gene id XLOC_026535
gene name ighv9-4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34036619 ~ 34042028 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051709
gcggcgttctgggcagggtgGCTgtctgcttccgaggtgcccgacTCTGAACAGTCAGTAAATGTGGCTCCAGGTGGTTTCTACAAGCTGAGCTGTGCCTGCAGTGGATTTAGTGTTAGTGGCACGGCCATGCACTGGATCCGTCAGGCACCTGGAAAAGGACTCGAatggattatttattattattcagattcTTATAAGAGCTCAGCTGAGTCAGTGCAGGGCAGATTCACAGCATCTAAAGACAGCTCCAATTTCTATCTGCACATGAATCAACTGAAGACTGAAGACACTGCTGTGTATTACTGCGCAACACAGACACTGTGA
>TCONS_00051710
gaagtggaaaaGTCTGAGTCAGTAAATGTGGCTCCAGGTGGTTTCTACAAGCTGAGCTGTGCCTGCAGTGGATTTAGTGTTAGTGGCACGGCCATGCACTGGATCCGTCAGGCACCTGGAAAAGGACTCGAatggattatttattattattcagattcTTATAAGAGCTCAGCTGAGTCAGTGCAGGGCAGATTCACAGCATCTAAAGACAGCTCCAATTTCTATCTGCACATGAATCAACTGAAGACTGAAGACACTGCTGTGTATTACTGCGCAACACAGACACTGTGA
>TCONS_00051711
ATGTTCACATTGTGTGTCTTGCTGCTGCTGACTGCTGTGTCTTGTATTGACTGTCAGGTTGTGCTCACACAGTCTGAACAGTCAGTAAATGTGGCTCCAGGTGGTTTCTACAAGCTGAGCTGTGCCTGCAGTGGATTTAGTGTTAGTGGCACGGCCATGCACTGGATCCGTCAGGCACCTGGAAAAGGACTCGAatggattatttattattattcagattcTTATAAGAGCTCAGCTGAGTCAGTGCAGGGCAGATTCACAGCATCTAAAGACAGCTCCAATTTCTATCTGCACATGAATCAACTGAAGACTGAAGACACTGCTGTGTATTACTGCGCAACACAGA
>TCONS_00051712
ATGGAGCACATAATCTTAGGATTTACAACAATTTGTATTGGCTTCTGTCTGAGGCAGTGACAATCAAACCAGGAGAATCCCATAAACTGACATGgcactgctttttttttatttttttggctccTCTATGGCTTGGACCAGACAAAAATCTGGAAAAGAGCTGGAATGGTTGGCATTGATTAAAtaatcaatacatttattactcTCAGTCTGTTCAAAGTTGATTCACCATCTCCAGAGACAACAGTAAGCAGCAGGTGTATCTGCAGATGAACAGCCTGAAGGAGGAAGACATCGCTGTGTATTATTGTGCAAGACA

Function

symbol description
ighv9-4 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092053 ENSDARG00000113059

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051709 False 327 mRNA 0.49 2 34036619 34041878
TCONS_00051710 False 291 mRNA 0.45 3 34036619 34042028
TCONS_00051711 False 346 mRNA 0.46 2 34036627 34037064
TCONS_00051712 True 319 IG_V_pseudogene 0.39 2 34037481 34037881

Neighbor

gene id symbol gene type direction distance location
XLOC_026534 BX649502.8 coding downstream 988 34035192 ~ 34035631 (-)
XLOC_026533 ighv11-2 coding downstream 2121 34034048 ~ 34034498 (-)
XLOC_026532 ighv13-2 coding downstream 4600 34031577 ~ 34032019 (-)
XLOC_026531 ighv2-3 coding downstream 5684 34030460 ~ 34030935 (-)
XLOC_026530 ighv1-3 coding downstream 7725 34028457 ~ 34028894 (-)
XLOC_026538 BX649502.6 coding upstream 5151 34047179 ~ 34047616 (-)
XLOC_026539 BX649502.4 coding upstream 6177 34048205 ~ 34048653 (-)
XLOC_026540 ighv3-2 coding upstream 8894 34050922 ~ 34056168 (-)
XLOC_026541 ighv11-1 coding upstream 10367 34052395 ~ 34052882 (-)
XLOC_026542 ighv1-2 coding upstream 11595 34053623 ~ 34054081 (-)
XLOC_026529 BX649502.7 non-coding downstream 13006 34023165 ~ 34023613 (-)
XLOC_026513 BX510335.1 non-coding downstream 87831 33948669 ~ 33948788 (-)
XLOC_026511 NA non-coding downstream 117424 33918566 ~ 33919195 (-)
XLOC_026509 CU695077.1 non-coding downstream 345865 33681518 ~ 33690754 (-)
XLOC_026544 BX649502.10 non-coding upstream 16651 34058679 ~ 34058717 (-)
XLOC_026547 BX649502.5 non-coding upstream 21927 34063955 ~ 34064936 (-)
XLOC_026558 BX649502.11 non-coding upstream 44013 34086041 ~ 34086483 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) LOC120574660 NA coding NC_053126.1 CM020923.1 9420152 ~ 9420698 (-)
tiger barb (Puntius tetrazona) trnas-uga_76 NA coding NC_056702.1 CM032071.1 26515577 ~ 26515657 (+)