XLOC_026540 (ighv3-2)


Basic Information

Item Value
gene id XLOC_026540
gene name ighv3-2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34050922 ~ 34056168 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051717
ataaaaggactaagctggaTCTGTTGGTGTCAAACACTGAGCGAGTCTGATGCAGTGGTCATTAAACCTGGAGGATCTCACAGACTTACCTGTACAATCTCTGGATTCGGTGGTAACTATGCCATGTCATGGATCAGACAGACTGCAGGAGGAGGTCTGGAGTGGCTGGCATACATCTCATCTGGCAGTGGTTCTATATACTACTCTCAGGCGGTTCAGAGGCGCTTCACCATCTCCAGAGATAACAGCAAGAACCAGATGTATCTGCAGATGAATAATATGAAGATTGAAGACACTGCTGTATATTATTGTGCAAGAGTGTCACAGTGA
>TCONS_00051718
aTGGATATTGTATCCAAACTAGCTTTTGTCATGTTTGCTCTCACAGAATTCTGTTGGTGTCAAACACTGAGCGAGTCTGATGCAGTGGTCATTAAACCTGGAGGATCTCACAGACTTACCTGTACAATCTCTGGATTCGGTGGTAACTATGCCATGTCATGGATCAGACAGACTGCAGGAGGAGGTCTGGAGTGGCTGGCATACATCTCATCTGGCAGTGGTTCTATATACTACTCTCAGGCGGTTCAGAGGCGCTTCACCATCTCCAGAGATAACAGCAAGAACCAGATGTATCTGCAGATGAATAATATGAAGATTGAAGACACTGCTGTATATTATTGTGCAAGAGTGT

Function

symbol description
ighv3-2 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030924-6 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000096357

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051717 False 330 mRNA 0.45 2 34050922 34056168
TCONS_00051718 True 352 mRNA 0.44 2 34050930 34051363

Neighbor

gene id symbol gene type direction distance location
XLOC_026539 BX649502.4 coding downstream 2269 34048205 ~ 34048653 (-)
XLOC_026538 BX649502.6 coding downstream 3306 34047179 ~ 34047616 (-)
XLOC_026535 ighv9-4 coding downstream 8894 34036619 ~ 34042028 (-)
XLOC_026537 ighv8-4 coding downstream 10859 34039630 ~ 34040063 (-)
XLOC_026536 ighv9-3 coding downstream 11680 34038753 ~ 34039242 (-)
XLOC_026544 BX649502.10 coding upstream 2511 34058679 ~ 34058717 (-)
XLOC_026545 ighv1-1 coding upstream 3529 34059697 ~ 34060153 (-)
XLOC_026546 ighv2-1 coding upstream 5232 34061400 ~ 34061892 (-)
XLOC_026547 BX649502.5 coding upstream 7787 34063955 ~ 34064936 (-)
XLOC_026548 ighv9-2 coding upstream 9945 34066113 ~ 34066548 (-)
XLOC_026534 BX649502.8 non-coding downstream 15291 34035192 ~ 34035631 (-)
XLOC_026529 BX649502.7 non-coding downstream 27309 34023165 ~ 34023613 (-)
XLOC_026513 BX510335.1 non-coding downstream 102134 33948669 ~ 33948788 (-)
XLOC_026558 BX649502.11 non-coding upstream 29873 34086041 ~ 34086483 (-)
XLOC_026572 NA non-coding upstream 83469 34139637 ~ 34141181 (-)
XLOC_026580 NA non-coding upstream 584880 34641048 ~ 34641973 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location