XLOC_026580


Basic Information

Item Value
gene id XLOC_026580
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34641048 ~ 34641973 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052476
ATGAGTCCAAAGAAACATCAGTCACATAAAACAACATGCTTGCTGTAAACACTTCATCTGAaggcgtgtatgtgtgtgtgtgtgtgtgtgtgtgttagtgggaGGGACAGTGGAGGTCCGTCCTGCCCCCAGTCCTGCCCGCAGATGGCTTCAATTCAGCAAAAGATGGTGGGTGGACGGGCTCAATGGAGGCTCAGAAGACTTTGACCATGGCCCCATAAATAGCGGAGGTCCCATTTACAGCTCACCtgcaacacacacgcacacacacactcagacataaTGAGCGATAATTGTAGCATAGCCTCAGGCAGCAGGGCTTTGGCTCAGGATGGATGGCAACTCTAGTTTAGATTGCAGAAGATTGTATTCCAGAAATCCCATTCAAGTACTCTGAGACTGCAAGTTAGTGTTAAGTTTTGAAGCAGCCTCACTCAAAACAAATCAACTGACAGCGGCATGGTgcctttataaataatgtaatgctGGAAATGCTGTCTTCATATATTGGCTGAATCATTTACTTCAGGTTGTCTGGCAGGTTGTTTGATATGTCTATGCCATGCATGTTTAGGCTCGCTGACACCTAGCATGAAAACTATAACAGCTATAAAGGTTTAATAATCTTTCTAATTCTAAATCTAATTCTAAAGACACAGCACTATAACATAtagccagtggtgtaaagtaactaattacaaatactcaaattactgtaaatgagtagtttttctcaggaattgtagttaactaagtagttttataaatgtatacttttacttttgcttgagtacattttaagtgctgtatctgtactttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052476 True 820 lncRNA 0.41 2 34641048 34641973

Neighbor

gene id symbol gene type direction distance location
XLOC_026579 tac4 coding downstream 16303 34623560 ~ 34624745 (-)
XLOC_026578 zgc:163143 coding downstream 27947 34601852 ~ 34613101 (-)
XLOC_026577 nmrk1 coding downstream 41386 34597741 ~ 34599662 (-)
XLOC_026576 si:ch211-165d12.4 coding downstream 47409 34587988 ~ 34593639 (-)
XLOC_026575 sept9a coding downstream 54645 34452336 ~ 34586403 (-)
XLOC_026581 znfl1 coding upstream 10171 34652144 ~ 34656745 (-)
XLOC_026582 thraa coding upstream 46049 34688022 ~ 34753605 (-)
XLOC_026583 nsfa coding upstream 125016 34766989 ~ 34801041 (-)
XLOC_026584 psmd11a coding upstream 159173 34801146 ~ 34816979 (-)
XLOC_026585 NA coding upstream 305429 34947402 ~ 34948061 (-)
XLOC_026572 NA non-coding downstream 499867 34139637 ~ 34141181 (-)
XLOC_026558 BX649502.11 non-coding downstream 554565 34086041 ~ 34086483 (-)
XLOC_026547 BX649502.5 non-coding downstream 576112 34063955 ~ 34064936 (-)
XLOC_026544 BX649502.10 non-coding downstream 582331 34058679 ~ 34058717 (-)
XLOC_026539 BX649502.4 non-coding downstream 592395 34048205 ~ 34048653 (-)
XLOC_026588 NA non-coding upstream 923155 35565128 ~ 35574451 (-)
XLOC_026600 NA non-coding upstream 1678266 36320239 ~ 36323625 (-)
XLOC_026606 NA non-coding upstream 1941127 36583100 ~ 36587136 (-)
XLOC_026612 FO744883.1 non-coding upstream 2114060 36756033 ~ 36756149 (-)

Expression


Co-expression Network