Fish Transcriptome and Expression Database

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model fish

XLOC_026612 (FO744883.1)

Basic Information

Item	Value
gene id	XLOC_026612
gene name	FO744883.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	36756033 ~ 36756149 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051846
TGAAGCTTGCCTAGCTCTcttcaactctcacatggtcactcactgaagctaagcagggctgcgccaggtcagtacctgcatgggagactacatgggaaagctGTGTTggtgccggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000106657

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00051846	True	117	rRNA	0.54	1	36756033	36756149

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_026611	abcc6b.1	coding	downstream	5965	36744518 ~ 36750068 (-)
XLOC_026610	myh11b	coding	downstream	44325	36667802 ~ 36711708 (-)
XLOC_026609	si:dkeyp-72e1.7	coding	downstream	143156	36610085 ~ 36612877 (-)
XLOC_026608	si:dkeyp-72e1.6	coding	downstream	149149	36605149 ~ 36606884 (-)
XLOC_026607	rrn3	coding	downstream	153533	36589427 ~ 36602500 (-)
XLOC_026613	abcc6b.1	coding	upstream	164	36756313 ~ 36764865 (-)
XLOC_026614	abcc6b.2	coding	upstream	51493	36807642 ~ 36824190 (-)
XLOC_026615	ramp2	coding	upstream	80562	36836711 ~ 36846496 (-)
XLOC_026616	cntnap1	coding	upstream	147890	36904039 ~ 36944749 (-)
XLOC_026617	NA	coding	upstream	197476	36953625 ~ 36954088 (-)
XLOC_026606	NA	non-coding	downstream	168897	36583100 ~ 36587136 (-)
XLOC_026600	NA	non-coding	downstream	432408	36320239 ~ 36323625 (-)
XLOC_026588	NA	non-coding	downstream	1181582	35565128 ~ 35574451 (-)
XLOC_026585	NA	non-coding	downstream	1807972	34947402 ~ 34948061 (-)
XLOC_026580	NA	non-coding	downstream	2114060	34641048 ~ 34641973 (-)
XLOC_026618	CT573704.1	non-coding	upstream	211722	36967871 ~ 36967993 (-)
XLOC_026619	NA	non-coding	upstream	213254	36969403 ~ 36972222 (-)
XLOC_026621	CT573704.2	non-coding	upstream	319549	37075698 ~ 37075813 (-)
XLOC_026625	NA	non-coding	upstream	825373	37581522 ~ 37584807 (-)

Expression

Co-expression Network