XLOC_026578 (zgc:163143)


Basic Information

Item Value
gene id XLOC_026578
gene name zgc:163143
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34601852 ~ 34613101 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051778
GTTTCAGTCTGTTTTGCTTTTTGATGAGCAGTCAGAGCAAATTCTGTTCGTTAATAGAGCGCACTTAACATTAACAAGCATACACGCTGTGGATAAATGTGAATGTTGGGCACACGAACAGGATGGTGTTAGTTTGTAGTGCGTATAACTGTAAAAACACTCTGAGGAACAAAAGCGTCTCTTTCCACTTATTCCCTCTGAAAGACCCCAGCTTGCTGAAAAAGTGGCTTAAAAATTTAAGATGGAAAGACTGGAAACCCAATCCAAACAGTAAGATCTGCTCGGCCCACTTTGAAGAGAAGTGTTTCATTTTAGAGGGGAAGAAAACAAGACTTCACACATGGGCTGTGCCGACTATCTTCTCATTTCCTAACCGGTATTCAGAAAGAAATGTTAAAATAAATCCCAGAAGCAGAAGGGCTCGGAGAATTGTTGGCGACCCCAGCTCTTCTATTCAAGCAGCAGAAACATCAGACGAGTCCAACTCTGTAAACCCAGCTCAGAGAAGCACAGACACGAGTTCACATACAAACACTTCTGAAGCAAACAGTTCAGATCTGACAGGAGCCAAGCCGAACGGTGACTCCACACAGCAGCTGACAGAACCAGAGAAAAGtcTGCAATGGACCATCCTTGGCGATGAAGTTCTGGACAGAAGCATGACAATACCCAGTTTCTTTCACAGCGGATATTGTTTTCCCAataaCATCCACTGGGCTGGTGACGATGAATTAAATATTGTGCCCCATGTGGTTTATGGAGTTCTAGGACAAACCAAACCCCAAATAATTGAGGTTAAAGCCAGGTGGGAATGGCTAGGTCTGGATGTTAGAGGCCCGTTCTCTCCGACAGtcaacaagcacacacacatcatgacTCTGACTGACTACCACTCCAAATGGGTGGAAGCTTTTCCTCTGACTGAGAGTCTGAGTCAGGACGTGGCCCAGTGTCTTGCTGAGGTCATCAGACAGCAGGGGTACCCTCTCGGAGTTCTGTCCCGACTGCCCAAACGGATCCTCTTGGAGATTAACCGTGAACTGAAGAAACACCTGAGGTTGAATGCAAACGCTTTAGTGATACACCACCGGCAAACTGGATACATGGACCTGGTCACCGAATCACTTCTTAATGATATGCTGGATGAGCTGGTGAAGAAACACAGTGGAATATGGCACATCCACCTCCCTGCTGCCACGCTGCGCCTCTGCTGCACAAACCACCCTACAACCAAAGAGAAACCTTTCACCTGCATGTGTGCCAGTGACTCGCCGTTTTCCTCATCACCCCGAGAACTGCCTTTCAGTGCTACTGATATTCGCTTGAGTTCGTTTGTCATCCCAACAACGAAGCAAACAATCTAGCAGTTGTGTTAGAAACTCAGgTACCCTGCTTGAGGAATTACATTTTTCTCAAgtaaacaaaagttttatttattatatgacctcatgttttttcatgtttgtactatatactgtaaatacacaaGCAGATTTGCACAGTTGTACAAATAttacaaagaaataaaacaaaattaaa

Function

symbol description
zgc:163143 Predicted to enable metal ion binding activity and sequence-specific DNA binding activity. Predicted to be located in nucleoplasm.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-143 Predicted to enable metal ion binding activity and sequence-specific DNA binding activity. Predicted to be located in nucleoplasm.

Ensembl:

ensembl_id ENSDARG00000076437

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051778 True 1539 mRNA 0.44 12 34601852 34613101

Neighbor

gene id symbol gene type direction distance location
XLOC_026577 nmrk1 coding downstream 2190 34597741 ~ 34599662 (-)
XLOC_026576 si:ch211-165d12.4 coding downstream 8213 34587988 ~ 34593639 (-)
XLOC_026575 sept9a coding downstream 15449 34452336 ~ 34586403 (-)
XLOC_026574 tnrc6c1 coding downstream 263883 34258755 ~ 34337969 (-)
XLOC_026573 yipf2 coding downstream 421388 34174004 ~ 34180464 (-)
XLOC_026579 tac4 coding upstream 10459 34623560 ~ 34624745 (-)
XLOC_026580 NA coding upstream 27947 34641048 ~ 34641973 (-)
XLOC_026581 znfl1 coding upstream 39043 34652144 ~ 34656745 (-)
XLOC_026582 thraa coding upstream 74921 34688022 ~ 34753605 (-)
XLOC_026583 nsfa coding upstream 153888 34766989 ~ 34801041 (-)
XLOC_026572 NA non-coding downstream 460671 34139637 ~ 34141181 (-)
XLOC_026558 BX649502.11 non-coding downstream 515369 34086041 ~ 34086483 (-)
XLOC_026547 BX649502.5 non-coding downstream 536916 34063955 ~ 34064936 (-)
XLOC_026544 BX649502.10 non-coding downstream 543135 34058679 ~ 34058717 (-)
XLOC_026539 BX649502.4 non-coding downstream 553199 34048205 ~ 34048653 (-)
XLOC_026585 NA non-coding upstream 334301 34947402 ~ 34948061 (-)
XLOC_026588 NA non-coding upstream 952027 35565128 ~ 35574451 (-)
XLOC_026600 NA non-coding upstream 1707138 36320239 ~ 36323625 (-)
XLOC_026606 NA non-coding upstream 1969999 36583100 ~ 36587136 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000542_00015650_00024091 NA coding CI01000542 null 15212 ~ 24608 (+)