XLOC_026537 (ighv8-4)


Basic Information

Item Value
gene id XLOC_026537
gene name ighv8-4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34039630 ~ 34040063 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051714
ATGGACTGCATTTCAGTTCTGCTGCTTTTGGCAACAGCACACTGCTATTTCTGTATTGAACTGGATCAACCTCTAGTCACGGTAGTAAAGCCAGGTGAAACATTCACCATCCCCTGTAAGATCACTGGATATTCAGCCTCAGGTGGTGGCTATACAAACTGGATCAGACATTCAGCTGGAAAACCCATGGAATGGATTGGCTGGTTTCAATCTTCCAGTAGCAACGGTGTCAAAGATTCACtaaagaataaaatcagtttctCTTCTGAATCCTCCAGCAATGCAGTTATTTTAACAGGAAAAAACTTCAACACTGAGGACACAGCTGTGTATTACTGTGCTCGCAATA

Function

symbol description
ighv8-4 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040514-29 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000109214

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051714 True 349 mRNA 0.42 2 34039630 34040063

Neighbor

gene id symbol gene type direction distance location
XLOC_026536 ighv9-3 coding downstream 388 34038753 ~ 34039242 (-)
XLOC_026534 BX649502.8 coding downstream 3999 34035192 ~ 34035631 (-)
XLOC_026533 ighv11-2 coding downstream 5132 34034048 ~ 34034498 (-)
XLOC_026532 ighv13-2 coding downstream 7611 34031577 ~ 34032019 (-)
XLOC_026531 ighv2-3 coding downstream 8695 34030460 ~ 34030935 (-)
XLOC_026538 BX649502.6 coding upstream 7116 34047179 ~ 34047616 (-)
XLOC_026539 BX649502.4 coding upstream 8142 34048205 ~ 34048653 (-)
XLOC_026540 ighv3-2 coding upstream 10859 34050922 ~ 34056168 (-)
XLOC_026541 ighv11-1 coding upstream 12332 34052395 ~ 34052882 (-)
XLOC_026542 ighv1-2 coding upstream 13560 34053623 ~ 34054081 (-)
XLOC_026529 BX649502.7 non-coding downstream 16017 34023165 ~ 34023613 (-)
XLOC_026513 BX510335.1 non-coding downstream 90842 33948669 ~ 33948788 (-)
XLOC_026511 NA non-coding downstream 120435 33918566 ~ 33919195 (-)
XLOC_026509 CU695077.1 non-coding downstream 348876 33681518 ~ 33690754 (-)
XLOC_026544 BX649502.10 non-coding upstream 18616 34058679 ~ 34058717 (-)
XLOC_026547 BX649502.5 non-coding upstream 23892 34063955 ~ 34064936 (-)
XLOC_026558 BX649502.11 non-coding upstream 45978 34086041 ~ 34086483 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000288_00046760_00048176 NA misc CI01000288 null 46577 ~ 48312 (+)