CI01000288_00046760_00048176


Basic Information

Item Value
gene id CI01000288_00046760_00048176
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000288
NCBI id null
chromosome length 106875
location 46577 ~ 48312 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000288_00046760_00048176.mRNA
TTATAAATCAAGAATACAATGTCAGGCAACTAAATTTGCATCACTGTTAATAATTCTCATACCAACTATTGATGGATACATTTTACGTCAATGCAAATCTCCACCCTTCTCTCATGTAAACAGGAGCACACAGGCTCTTAGTGTTTTACAGAGCCACAGTGCAGTGAAAATACAACCAGAATCATGGACTGCATTTCCATACTGCTGGTTTTGGCAACTGCACCCTGTCTTTTATGTATTGAGCTGAATCAGCCTCCTGTCATGGTAGTAAAACCAGGAGAAACATTTACCATCGCTTGTAAGATCACTGGATATTCAGCTTCAGGCAGTGGCTATACAAACTGGATCAGACATTCAAGTGGAAAACCGATGGAATGGATTGGCTGGTTCTACACTTCCAGTAGCAATGGTGTCAAAGATTCACTGAAAAATAAGATCAGTTTCTCATCTGAATCCTCCAGCAATGCAGTCATTTTAACAGGACAAAACTTCAACACTGAAGACACAGCTGTGTATTATTGTGCTCGAAAAGCTCTGGAGTGGATTGGATTGATTGGCTCTGGTGGAGGCTTAGACTATAAGGATTCACTGAAAAGCAAGTTCAGCATCAGCAGAGACACCTCCAGTAACACAATAACACTGCAGGGAAATAATATGCAAGCTCAAGACACAGCTGTGTATTATTGTGCCAGAGAATCACAGTGACAGACGCAAACAGTCTCCTTGTACAAAAACACATCATTGTACAAATTAGGGTATTCATCATGTTTTTCCTCCAAATATTTATAACAACAGATAACAGATTTACAGATAAAGTATTATATGTTTCAATAGGAAGTCA
>TU463388
ATTTTACGTCAATGCAAATCTCCACCCTTCTCTCATGTAAACAGGAGCACACAGGCTCTTAGTGTTTTACAGAGCCACAGTGCAGTGAAAATACAACCAGAATCATGGACTGCATTTCCATACTGCTGGTTTTGGCAACTGCACCCTGTCTTTTATGTATTGAGCTGAATCAGCCTCCTGTCATGGTAGTAAAACCAGGAGAAACATTTACCATCGCTTGTAAGATCACTGGATATTCAGCTTCAGGCAGTGGCTATACAAACTGGATCAGACATTCAAGTGGAAAACCGATGGAATGGATTGGCTGGTTCTACACTTCCAGTAGCAATGGTGTCAAAGATTCACTGAAAAATAAGATCAGTTTCTCATCTGAATCCTCCAGCAATGCAGTCATTTTAACAGGACAAAACTTCAACACTGAAGACACAGCTGTGTATTATTGTGCTCGTGATACACTATGCCACAAACTGCCACAGGACCTGCACAAGAACCTCTCTTCAATGAAGACATTTTCAATAAAAAGGTTTATTTGTTGACATAATATTAGATCTTTCAGACTTTTAGTATAGCTTATGAAAAAATACCAAAGTTTGTACAATCAAAAACATGATATGTTGGATTTACTTAACTTTTGATGTCAACAGGTTCCACGTAACTGGATTATGTTGCATTTAGTTAACATTATTTATTTCAGTTAACTTAACTTTATTACATAAGGTTAATTCAATGCCATTTAGTTGAATCAGGTTAACATTCTTAATTTGTCCAAAACTATTAAGTTCAATTATCATAAAATTAATATCAAACAAAAATTAAGTAATCCAGATTAAGTGATTAGTTTATTTAGTGAATGCATTTAAGATCAATTTTTACAACTTTTACAAAAGTTACTCTGTAAAGACTTTTATTGTTAGCAAGAAGACGGTTTTGTTACATTCATGGCATGCCCAGAATAGCTGTTTTTTTTTTATCATTAAAACAACTTTAATTGTTGTTAGCAGGACCTCAACCCAAGCACATTATTATGCAAAATTCACTTTTTAAGGTGTTTTAACACAGATGTGTGTCCACAATGTGAATAAACAACCAGCCTATAATGGTAAAAAATCCACCGACTACTTTTTTTATAATCCCCATTTAACATTTTCAATCTCTCAGAACACCTACTCCTACATATAGGGATGCCACTCTAACTATCAACTGTAAAGTCTCATATTCAGTTACTAGCTATATCATACAGCCTGGATTCATCAGCCTGCAGGAAAAGCTCTGGAGTGGATTGGATTGATTGGCTCTGGTGGAGGCTTAGACTATAAGGATTCACTGAAAAGCAAGTTCAGCATCAGCAGAGACACCTCCAGTAACACAATAACACTGCAGGGAAATAATATGCAAGCTCAAGACACAGCTGTGTATTATTGTGCCAGAGAATC

Function

NR:

description
Ig H-chain V-D-J-region precursor, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000288_00046760_00048176.mRNA False 841 mRNA 0.39 3 46577 48312
TU463388 True 1433 TUCP 0.36 2 46656 48169

Neighbor

gene id symbol gene type direction distance location
CI01000288_00040271_00040733 NA coding upstream 5791 40171 ~ 40786 (+)
CI01000288_00029004_00039721 NA coding upstream 6740 26835 ~ 39837 (+)
CI01000288_00026699_00027148 IGHV6-1 coding upstream 19404 26612 ~ 27173 (+)
CI01000288_00022325_00022780 NA coding upstream 23618 22073 ~ 22959 (+)
CI01000288_00003704_00011169 NA coding upstream 35254 3618 ~ 11323 (+)
CI01000288_00050351_00060483 IGHV5-5 coding downstream 1518 49830 ~ 60786 (+)
CI01000288_00069736_00071155 NA coding downstream 21195 69507 ~ 72352 (+)
CI01000288_00073310_00085164 NA coding downstream 24903 73215 ~ 85356 (+)
CI01000288_00099408_00099884 NA coding downstream 51051 99363 ~ 99968 (+)
CI01000288_00046760_00048176 NA non-coding downstream 27015 46577 ~ 48312 (+)
G403296 NA other upstream 15651 59597 ~ 59676 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026537 ighv8-4 coding NC_007114.7 CM002887.2 34039630 ~ 34040063 (-)
striped catfish (Pangasianodon hypophthalmus) LOC117598924 NA misc NC_047607.1 CM018553.1 22379243 ~ 22379686 (+)