RNA id: TCONS_00051677


Basic Information

Item Value
RNA id TCONS_00051677
length 624
lncRNA type retained_intron
GC content 0.38
exon number 4
gene id XLOC_026512
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33921971 ~ 33941875 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCATTAACAGTACTTCTTACTCTGCAGTAATGACGTCACTGGGTTCACAGGGGAGCAGCAGTTCATCCTCAACGGAGTATGTAGTACGAGTTCcaaaAAACACCAATAAGAAATACAGTATAATGGCTTTCAATGCTGGTGATAAAGTCAGTTGTTCCACATGGACTCAGGCTCGTATGGAGCGGGACATGAGTAATAGACGTATATATGGTGAGGAGGAGACACAAGAGGGGGCAGCAGGGAGTGAGTTTGGAAAAAAACAGAGAGAAGAAGCAAGGAGGAAGAAGTATGGCATCATTACGAAAGAGTTCAAGGTAGAGGACCAGCCTTGGATCCTTAAAGTTAACGGCAAGGCAGGAAGAAGGTACACTTTATGCTTTTATCTTTTGCATTTAAGTGTTTATTGTTGCAATGATTGTTGTTGTGTCACCATGCATGGGGCTTATGATTTGGGcagaataaaaatacttttgaatTAAAATCAAACATgacacaaaaatgtcaaaatttgtAGTAATCAAAAGTGGATTAAGTGGTTATTCAGAAAGTTATTCATGAAAGTTATTCAGATTGCATTTATGGAATAGTTTCTGTGAACcattcttttttatgtaaagtcTGCA

Function

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005674 transcription factor TFIIF complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0016251 RNA polymerase II general transcription initiation factor activity molecular_function
GO:0001096 TFIIF-class transcription factor complex binding molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-030131-4557 Predicted to enable RNA polymerase II general transcription initiation factor activity and TFIIF-class transcription factor complex binding activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within positive regulation of transcription elongation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIF complex. Orthologous to human GTF2F1 (general transcription factor IIF subunit 1).

Ensembl:

ensembl_id ENSDART00000151196

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051675 lncRNA downstream 1015 33922620 ~ 33935438 (-) False XLOC_026512
TCONS_00053065 lncRNA downstream 17258 33918566 ~ 33919195 (-) True XLOC_026511
TCONS_00051667 lncRNA downstream 245699 33681518 ~ 33690754 (-) True XLOC_026509
TCONS_00051659 lncRNA downstream 498721 33435754 ~ 33437732 (-) True XLOC_026506
TCONS_00051657 lncRNA downstream 508869 33425545 ~ 33427584 (-) True XLOC_026504
TCONS_00053066 lncRNA upstream 200816 34139637 ~ 34141181 (-) True XLOC_026572
TCONS_00051762 lncRNA upstream 240986 34179807 ~ 34180432 (-) False XLOC_026573
TCONS_00051763 lncRNA upstream 240986 34179807 ~ 34180451 (-) True XLOC_026573
TCONS_00051771 lncRNA upstream 531333 34470154 ~ 34477363 (-) False XLOC_026575
TCONS_00051773 lncRNA upstream 587121 34525942 ~ 34546406 (-) False XLOC_026575
TCONS_00051676 mRNA downstream 1253 33932379 ~ 33935200 (-) False XLOC_026512
TCONS_00051674 mRNA downstream 1665 33922387 ~ 33934788 (-) False XLOC_026512
TCONS_00051670 mRNA downstream 34970 33791648 ~ 33901483 (-) False XLOC_026510
TCONS_00051669 mRNA downstream 34970 33791648 ~ 33901483 (-) True XLOC_026510
TCONS_00051668 mRNA downstream 55502 33773156 ~ 33880951 (-) False XLOC_026510
TCONS_00051679 mRNA upstream 10425 33949246 ~ 33961589 (-) True XLOC_026514
TCONS_00051680 mRNA upstream 24426 33963247 ~ 33967767 (-) False XLOC_026515
TCONS_00051681 mRNA upstream 26757 33965578 ~ 33967767 (-) False XLOC_026515
TCONS_00051682 mRNA upstream 26758 33965579 ~ 34027178 (-) False XLOC_026515
TCONS_00051683 mRNA upstream 26758 33965579 ~ 34095221 (-) False XLOC_026515
TCONS_00051656 other downstream 512125 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051635 other downstream 962919 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051585 other downstream 1749068 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051529 other downstream 3135795 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 3448359 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051678 other upstream 9848 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 84344 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 96371 34035192 ~ 34035631 (-) True XLOC_026534
TCONS_00051712 other upstream 98660 34037481 ~ 34037881 (-) True XLOC_026535
TCONS_00051715 other upstream 108358 34047179 ~ 34047616 (-) True XLOC_026538

Expression Profile

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