RNA id: TCONS_00051675


Basic Information

Item Value
RNA id TCONS_00051675
length 785
lncRNA type retained_intron
GC content 0.45
exon number 5
gene id XLOC_026512
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33921971 ~ 33941875 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGAAAATTGTAATTCTTATAAATATTAGTCTTGCCATTAAAAAGCCATCCACTTTTAAGGTGGCAATAAACTAAATCTGAATAAAATGTGCTCATGACTAATTAAAACCATCGCAACCAGTCGTGCTGACACAATGAGCTGATTTCGGATTTGTTGTTGgtgtttaattgcatttaaagtgtgttattatttgtttagATCTTGTTTTActgctgttttctttctctttgcCACTCAGATTTAAGGGTATAAAAAAAGGGGGCGTTACAGAGAATGCGTCCTACTACATCTTCACACAGAGTGCCGATGGTGCTTTTGAGGCATTTCCCGTGCACGCCTGGTATAACTTCACACCACAGGCCAAACACCGCACGCTCACAGCTGAGGAAGCAGAGGAAGAGTGGGGCAGgAGAAACAAAGTGGTGAACCACTTCAGTATCATGCTCCAGCGGCGTTTAAGAGAACAGGAGCGAGGAGGAGGAGATGAGGATGAGGAGGAAGGAGAAAAAGGcacaaagaaaaagaagaagggaGGCAGAGGAGGTGACCTGCGAATTCATGACCTCGAGGAAGATTTGGAAATGAGCAGCGATGAAAGTGATGGCAGCAATGGAGATGATGATGAAGCCAAGGCGAAAGCTAAAAAGGAAAAAGTCCTCAAAGCTCCTCAGGGAAAAGCACACCACAGCCAGCGTCAGGGAAATCCACCCCCAGCGCCAGTGATGTGCTGCTGACAGAGGATGCGGTGCGCAGGTATCTCATCAGAAAGCCCATGACCACTAA

Function

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005674 transcription factor TFIIF complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0016251 RNA polymerase II general transcription initiation factor activity molecular_function
GO:0001096 TFIIF-class transcription factor complex binding molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-030131-4557 Predicted to enable RNA polymerase II general transcription initiation factor activity and TFIIF-class transcription factor complex binding activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within positive regulation of transcription elongation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIF complex. Orthologous to human GTF2F1 (general transcription factor IIF subunit 1).

Ensembl:

ensembl_id ENSDART00000151475

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053065 lncRNA downstream 3425 33918566 ~ 33919195 (-) True XLOC_026511
TCONS_00051667 lncRNA downstream 231866 33681518 ~ 33690754 (-) True XLOC_026509
TCONS_00051659 lncRNA downstream 484888 33435754 ~ 33437732 (-) True XLOC_026506
TCONS_00051657 lncRNA downstream 495036 33425545 ~ 33427584 (-) True XLOC_026504
TCONS_00051655 lncRNA downstream 495688 33424024 ~ 33426932 (-) False XLOC_026504
TCONS_00051677 lncRNA upstream 1015 33936453 ~ 33938821 (-) True XLOC_026512
TCONS_00053066 lncRNA upstream 204199 34139637 ~ 34141181 (-) True XLOC_026572
TCONS_00051762 lncRNA upstream 244369 34179807 ~ 34180432 (-) False XLOC_026573
TCONS_00051763 lncRNA upstream 244369 34179807 ~ 34180451 (-) True XLOC_026573
TCONS_00051771 lncRNA upstream 534716 34470154 ~ 34477363 (-) False XLOC_026575
TCONS_00051670 mRNA downstream 21137 33791648 ~ 33901483 (-) False XLOC_026510
TCONS_00051669 mRNA downstream 21137 33791648 ~ 33901483 (-) True XLOC_026510
TCONS_00051668 mRNA downstream 41669 33773156 ~ 33880951 (-) False XLOC_026510
TCONS_00051666 mRNA downstream 348044 33570583 ~ 33574576 (-) True XLOC_026508
TCONS_00051662 mRNA downstream 349368 33570583 ~ 33573252 (-) False XLOC_026508
TCONS_00051679 mRNA upstream 13808 33949246 ~ 33961589 (-) True XLOC_026514
TCONS_00051680 mRNA upstream 27809 33963247 ~ 33967767 (-) False XLOC_026515
TCONS_00051681 mRNA upstream 30140 33965578 ~ 33967767 (-) False XLOC_026515
TCONS_00051682 mRNA upstream 30141 33965579 ~ 34027178 (-) False XLOC_026515
TCONS_00051683 mRNA upstream 30141 33965579 ~ 34095221 (-) False XLOC_026515
TCONS_00051656 other downstream 498292 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051635 other downstream 949086 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051585 other downstream 1735235 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051529 other downstream 3121962 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 3434526 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051678 other upstream 13231 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 87727 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 99754 34035192 ~ 34035631 (-) True XLOC_026534
TCONS_00051712 other upstream 102043 34037481 ~ 34037881 (-) True XLOC_026535
TCONS_00051715 other upstream 111741 34047179 ~ 34047616 (-) True XLOC_026538

Expression Profile

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