RNA id: TCONS_00051720


Basic Information

Item Value
RNA id TCONS_00051720
length 384
RNA type mRNA
GC content 0.45
exon number 2
gene id XLOC_026542
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34053623 ~ 34054081 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTATCTTTTTCTCTCTTCATTTCTTTTGAGGTTATGATGGACGTGTTACAATTTGGAGTTCTGCTGATGATTGTTTCAACTGTTCGTGGTCAGTCTTTGACCTCCTCAGACTCTGTGGTGAAAAGACCAGGAGAATCAGTCACTCTGTCCTGCACTGTGTCTGGATTCTCAATGAGCAGCTACTGGATGCACTGGATCCGCCAGAAACCAGGGAAAGGACTGGAGTGGATCGGGCGAATTGATCGTGGCACTGGCACTATTTTTGCTCAGTCTTTACAAGGCCAGTTCACCATCACCAAAGACACCAGTAAAAACATGCTGTATTTAGAGGTGAAACAGCTGAAGAGTGAAGACACAGCTGTTTATTACTGTGCACGAGACT

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030924-2 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDART00000151590

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051677 lncRNA downstream 114802 33936453 ~ 33938821 (-) True XLOC_026512
TCONS_00051675 lncRNA downstream 118185 33922620 ~ 33935438 (-) False XLOC_026512
TCONS_00053065 lncRNA downstream 134428 33918566 ~ 33919195 (-) True XLOC_026511
TCONS_00051667 lncRNA downstream 362869 33681518 ~ 33690754 (-) True XLOC_026509
TCONS_00051659 lncRNA downstream 615891 33435754 ~ 33437732 (-) True XLOC_026506
TCONS_00053066 lncRNA upstream 85556 34139637 ~ 34141181 (-) True XLOC_026572
TCONS_00051762 lncRNA upstream 125726 34179807 ~ 34180432 (-) False XLOC_026573
TCONS_00051763 lncRNA upstream 125726 34179807 ~ 34180451 (-) True XLOC_026573
TCONS_00051771 lncRNA upstream 416073 34470154 ~ 34477363 (-) False XLOC_026575
TCONS_00051773 lncRNA upstream 471861 34525942 ~ 34546406 (-) False XLOC_026575
TCONS_00051719 mRNA downstream 741 34052395 ~ 34052882 (-) True XLOC_026541
TCONS_00051718 mRNA downstream 2260 34050930 ~ 34051363 (-) True XLOC_026540
TCONS_00051710 mRNA downstream 11595 34036619 ~ 34042028 (-) False XLOC_026535
TCONS_00051709 mRNA downstream 11745 34036619 ~ 34041878 (-) False XLOC_026535
TCONS_00051714 mRNA downstream 13560 34039630 ~ 34040063 (-) True XLOC_026537
TCONS_00051721 mRNA upstream 1188 34055269 ~ 34055745 (-) True XLOC_026543
TCONS_00051723 mRNA upstream 5616 34059697 ~ 34060153 (-) True XLOC_026545
TCONS_00051724 mRNA upstream 7319 34061400 ~ 34061892 (-) True XLOC_026546
TCONS_00051726 mRNA upstream 12032 34066113 ~ 34066548 (-) True XLOC_026548
TCONS_00051727 mRNA upstream 12870 34066951 ~ 34068044 (-) False XLOC_026549
TCONS_00051716 other downstream 4970 34048205 ~ 34048653 (-) True XLOC_026539
TCONS_00051715 other downstream 6007 34047179 ~ 34047616 (-) True XLOC_026538
TCONS_00051712 other downstream 15742 34037481 ~ 34037881 (-) True XLOC_026535
TCONS_00051708 other downstream 17992 34035192 ~ 34035631 (-) True XLOC_026534
TCONS_00051702 other downstream 30010 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051722 other upstream 4598 34058679 ~ 34058717 (-) True XLOC_026544
TCONS_00051725 other upstream 9874 34063955 ~ 34064936 (-) True XLOC_026547
TCONS_00051740 other upstream 31960 34086041 ~ 34086483 (-) True XLOC_026558
TCONS_00051752 other upstream 48876 34102957 ~ 34103365 (-) True XLOC_026563
TCONS_00051772 other upstream 471861 34525942 ~ 34546399 (-) False XLOC_026575

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01112631_00000320_00000761.mRNA True 642 mRNA 0.39 2 CI01112631 56 ~ 761 (-)
rainbow trout (Oncorhynchus mykiss) TU254899 True 514 lncRNA 0.41 2 NC_048567.1 10217461 ~ 10219349 (-)
striped catfish (Pangasianodon hypophthalmus) TU254899 True 626 TUCP 0.44 3 NC_047607.1 22225641 ~ 22257250 (-)