XLOC_026549 (ighv10-1)


Basic Information

Item Value
gene id XLOC_026549
gene name ighv10-1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34066951 ~ 34068044 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051727
ggtggcGCAGTGACCATCAAACCTGGAGAATCCCATAAACTGACATGCACTGCTTCTAGTTTTGATATCTCTGGCTCCTGGATGGCTTGGATCAGACAGAAATCTGGAAAAGAGCTGGAATGGCTGGCATTGATCAGATATGATAGCCAGGATATGTATTACTTTCAGTCTGTCCAAGGACGGTTCACCATCTCCAGAGACAACAGTAAGCAGCAGGTATATCTGCAGATGAACAGCCTGAAGGATGAAGACACTGCTGTGTATTATTGTGCAAGAGAGCCACAGTGA
>TCONS_00051728
ATGGAGGACATAATCCTAGGATTTACAATACTGTTACTGTCTTCTCAAAgttgttggtgtcagacactAACTGAGTCTGAGGCAGTGACCATCAAACCTGGAGAATCCCATAAACTGACATGCACTGCTTCTAGTTTTGATATCTCTGGCTCCTGGATGGCTTGGATCAGACAGAAATCTGGAAAAGAGCTGGAATGGCTGGCATTGATCAGATATGATAGCCAGGATATGTATTACTTTCAGTCTGTCCAAGGACGGTTCACCATCTCCAGAGACAACAGTAAGCAGCAGGTATATCTGCAGATGAACAGCCTGAAGGATGAAGACACTGCTGTGTATTATTGTGCAAGAGAGC

Function

symbol description
ighv10-1 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040514-34 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000096316

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051727 False 288 mRNA 0.46 2 34066951 34068044
TCONS_00051728 True 355 mRNA 0.44 2 34066959 34067392

Neighbor

gene id symbol gene type direction distance location
XLOC_026548 ighv9-2 coding downstream 403 34066113 ~ 34066548 (-)
XLOC_026547 BX649502.5 coding downstream 2015 34063955 ~ 34064936 (-)
XLOC_026546 ighv2-1 coding downstream 5059 34061400 ~ 34061892 (-)
XLOC_026545 ighv1-1 coding downstream 6798 34059697 ~ 34060153 (-)
XLOC_026544 BX649502.10 coding downstream 8234 34058679 ~ 34058717 (-)
XLOC_026550 ighv9-1 coding upstream 1122 34069166 ~ 34069637 (-)
XLOC_026551 ighv8-3 coding upstream 1978 34070022 ~ 34070451 (-)
XLOC_026552 ighv8-2 coding upstream 3968 34072012 ~ 34072446 (-)
XLOC_026553 ighv6-2 coding upstream 6234 34074278 ~ 34078179 (-)
XLOC_026554 ighv7-1 coding upstream 8334 34076378 ~ 34076807 (-)
XLOC_026539 BX649502.4 non-coding downstream 18298 34048205 ~ 34048653 (-)
XLOC_026538 BX649502.6 non-coding downstream 19335 34047179 ~ 34047616 (-)
XLOC_026534 BX649502.8 non-coding downstream 31320 34035192 ~ 34035631 (-)
XLOC_026558 BX649502.11 non-coding upstream 17997 34086041 ~ 34086483 (-)
XLOC_026572 NA non-coding upstream 71593 34139637 ~ 34141181 (-)
XLOC_026580 NA non-coding upstream 573004 34641048 ~ 34641973 (-)
XLOC_026585 NA non-coding upstream 879358 34947402 ~ 34948061 (-)
XLOC_026588 NA non-coding upstream 1497084 35565128 ~ 35574451 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01083751_00000037_00000350 IGHV10-1 coding CI01083751 null 37 ~ 391 (+)