RNA id: TCONS_00051727


Basic Information

Item Value
RNA id TCONS_00051727
length 288
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_026549
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34066951 ~ 34068044 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggtggcGCAGTGACCATCAAACCTGGAGAATCCCATAAACTGACATGCACTGCTTCTAGTTTTGATATCTCTGGCTCCTGGATGGCTTGGATCAGACAGAAATCTGGAAAAGAGCTGGAATGGCTGGCATTGATCAGATATGATAGCCAGGATATGTATTACTTTCAGTCTGTCCAAGGACGGTTCACCATCTCCAGAGACAACAGTAAGCAGCAGGTATATCTGCAGATGAACAGCCTGAAGGATGAAGACACTGCTGTGTATTATTGTGCAAGAGAGCCACAGTGA

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040514-34 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDART00000187926

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051677 lncRNA downstream 128130 33936453 ~ 33938821 (-) True XLOC_026512
TCONS_00051675 lncRNA downstream 131513 33922620 ~ 33935438 (-) False XLOC_026512
TCONS_00053065 lncRNA downstream 147756 33918566 ~ 33919195 (-) True XLOC_026511
TCONS_00051667 lncRNA downstream 376197 33681518 ~ 33690754 (-) True XLOC_026509
TCONS_00051659 lncRNA downstream 629219 33435754 ~ 33437732 (-) True XLOC_026506
TCONS_00053066 lncRNA upstream 71593 34139637 ~ 34141181 (-) True XLOC_026572
TCONS_00051762 lncRNA upstream 111763 34179807 ~ 34180432 (-) False XLOC_026573
TCONS_00051763 lncRNA upstream 111763 34179807 ~ 34180451 (-) True XLOC_026573
TCONS_00051771 lncRNA upstream 402110 34470154 ~ 34477363 (-) False XLOC_026575
TCONS_00051773 lncRNA upstream 457898 34525942 ~ 34546406 (-) False XLOC_026575
TCONS_00051726 mRNA downstream 403 34066113 ~ 34066548 (-) True XLOC_026548
TCONS_00051724 mRNA downstream 5059 34061400 ~ 34061892 (-) True XLOC_026546
TCONS_00051723 mRNA downstream 6798 34059697 ~ 34060153 (-) True XLOC_026545
TCONS_00051717 mRNA downstream 10783 34050922 ~ 34056168 (-) False XLOC_026540
TCONS_00051721 mRNA downstream 11206 34055269 ~ 34055745 (-) True XLOC_026543
TCONS_00051729 mRNA upstream 1122 34069166 ~ 34069637 (-) True XLOC_026550
TCONS_00051730 mRNA upstream 1978 34070022 ~ 34070451 (-) True XLOC_026551
TCONS_00051731 mRNA upstream 3968 34072012 ~ 34072446 (-) True XLOC_026552
TCONS_00051732 mRNA upstream 6234 34074278 ~ 34078179 (-) False XLOC_026553
TCONS_00051733 mRNA upstream 6245 34074289 ~ 34074806 (-) False XLOC_026553
TCONS_00051725 other downstream 2015 34063955 ~ 34064936 (-) True XLOC_026547
TCONS_00051722 other downstream 8234 34058679 ~ 34058717 (-) True XLOC_026544
TCONS_00051716 other downstream 18298 34048205 ~ 34048653 (-) True XLOC_026539
TCONS_00051715 other downstream 19335 34047179 ~ 34047616 (-) True XLOC_026538
TCONS_00051712 other downstream 29070 34037481 ~ 34037881 (-) True XLOC_026535
TCONS_00051740 other upstream 17997 34086041 ~ 34086483 (-) True XLOC_026558
TCONS_00051752 other upstream 34913 34102957 ~ 34103365 (-) True XLOC_026563
TCONS_00051772 other upstream 457898 34525942 ~ 34546399 (-) False XLOC_026575
TCONS_00051781 other upstream 584266 34652310 ~ 34656737 (-) False XLOC_026581
TCONS_00051782 other upstream 584928 34652972 ~ 34654998 (-) False XLOC_026581