RNA id: TCONS_00051730


Basic Information

Item Value
RNA id TCONS_00051730
length 349
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_026551
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34070022 ~ 34070451 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACTGCATTTCAGTTCTGCTGCTTTTGGCAACAGCACACTgctatttctgtattGAACTGGATCAGCATCCTGCCATGGAAGTAAAACCAGAAGAAACATTCACCATCGTCTGTAAAATCACTGGATATTCAGCCTCAGGTGGTGGCTATACAAACTGGATCAGACATTCAGCTGGAAAACCCATGGAATGGATCGGCTATTTTCATACTTCCAGTAACAACGGTGTCAAAGATTCACtgaagaataaaatcagtttctCTTCTGAATCCTCCAGCAATGCAGTCATTTTAACAGGAAAAAACTTCAACACTGAGGACACAGCTGTGTATTACTGTGTTCGCAATA

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040514-28 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDART00000151458

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051677 lncRNA downstream 131201 33936453 ~ 33938821 (-) True XLOC_026512
TCONS_00051675 lncRNA downstream 134584 33922620 ~ 33935438 (-) False XLOC_026512
TCONS_00053065 lncRNA downstream 150827 33918566 ~ 33919195 (-) True XLOC_026511
TCONS_00051667 lncRNA downstream 379268 33681518 ~ 33690754 (-) True XLOC_026509
TCONS_00051659 lncRNA downstream 632290 33435754 ~ 33437732 (-) True XLOC_026506
TCONS_00053066 lncRNA upstream 69186 34139637 ~ 34141181 (-) True XLOC_026572
TCONS_00051762 lncRNA upstream 109356 34179807 ~ 34180432 (-) False XLOC_026573
TCONS_00051763 lncRNA upstream 109356 34179807 ~ 34180451 (-) True XLOC_026573
TCONS_00051771 lncRNA upstream 399703 34470154 ~ 34477363 (-) False XLOC_026575
TCONS_00051773 lncRNA upstream 455491 34525942 ~ 34546406 (-) False XLOC_026575
TCONS_00051729 mRNA downstream 385 34069166 ~ 34069637 (-) True XLOC_026550
TCONS_00051727 mRNA downstream 1978 34066951 ~ 34068044 (-) False XLOC_026549
TCONS_00051728 mRNA downstream 2630 34066959 ~ 34067392 (-) True XLOC_026549
TCONS_00051726 mRNA downstream 3474 34066113 ~ 34066548 (-) True XLOC_026548
TCONS_00051724 mRNA downstream 8130 34061400 ~ 34061892 (-) True XLOC_026546
TCONS_00051731 mRNA upstream 1561 34072012 ~ 34072446 (-) True XLOC_026552
TCONS_00051732 mRNA upstream 3827 34074278 ~ 34078179 (-) False XLOC_026553
TCONS_00051733 mRNA upstream 3838 34074289 ~ 34074806 (-) False XLOC_026553
TCONS_00051734 mRNA upstream 5122 34075573 ~ 34076039 (-) True XLOC_026553
TCONS_00051735 mRNA upstream 5927 34076378 ~ 34076807 (-) True XLOC_026554
TCONS_00051725 other downstream 5086 34063955 ~ 34064936 (-) True XLOC_026547
TCONS_00051722 other downstream 11305 34058679 ~ 34058717 (-) True XLOC_026544
TCONS_00051716 other downstream 21369 34048205 ~ 34048653 (-) True XLOC_026539
TCONS_00051715 other downstream 22406 34047179 ~ 34047616 (-) True XLOC_026538
TCONS_00051712 other downstream 32141 34037481 ~ 34037881 (-) True XLOC_026535
TCONS_00051740 other upstream 15590 34086041 ~ 34086483 (-) True XLOC_026558
TCONS_00051752 other upstream 32506 34102957 ~ 34103365 (-) True XLOC_026563
TCONS_00051772 other upstream 455491 34525942 ~ 34546399 (-) False XLOC_026575
TCONS_00051781 other upstream 581859 34652310 ~ 34656737 (-) False XLOC_026581
TCONS_00051782 other upstream 582521 34652972 ~ 34654998 (-) False XLOC_026581

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) unassigned_transcript_821 True 1113 V_gene_segment 0.39 2 NC_053126.1 9735626 ~ 9736834 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_821 True 82 tRNA 0.59 1 NC_056702.1 26636838 ~ 26636919 (-)